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The map label for this gene is trbF [H]

Identifier: 92109683

GI number: 92109683

Start: 18612

End: 19274

Strand: Reverse

Name: trbF [H]

Synonym: Nham_4562

Alternate gene names: 92109683

Gene position: 19274-18612 (Counterclockwise)

Preceding gene: 92109684

Following gene: 92109682

Centisome position: 15.88

GC content: 61.24

Gene sequence:

>663_bases
ATGGCCGCGCGTAATCCGCCCGACAATCCCTATCTCGCCGCGCGCCAGGAATGGAACGAGCGCTACGGCTCCTATGTCAA
GGCGGCCGCCACATGGCGCGTCGTCGGCATCGTCGCCATGCTGATGGCGGTGATCGGCTTCGCCTACGCGTTGTTCGAGA
GCACGCAGGTCAAGCTCGTCCCCTACATCGTCGAGGTTGACAAGCTCGGCACGGCGGTGAACGCGGGCTTCCCGCAGCAG
ATCGAATATGCCGATCCACGCGTGGTGCGCGCGACACTCGGAAGCTTCGTCTCGAACTTCCGCTCGGTGACGCCCGATGC
GGTGGTGCAGAAGCAATATATCGATCGGACCTACGCGTTGTTGCGAACCTCGGATCCGGCCACGCAGAAGATCAATGACT
GGTTTCGCAGCAACTCGCCGTTCGAGAAGGCGAGGACGACAACGGTCGCCATCGAGGTCAACAACATCGTGGCTCTGTCC
AGCCAGACTTATCAGATCGACTGGACCGAATTCGAGCGCGACCGGAAAGGAAAGCAAACCGGCGAGCACCGCTTTCGCGG
CATCGCCACTGTGACGCTGACTCCACCCCAGGACGAGCAAACCATCCGGCTCAATCCGATCGGCCTCTACCTGCGTGATT
TCGACTGGACGGCGCAACTATGA

Upstream 100 bases:

>100_bases
CGCCAACGCCAAGCTCGACCGGCAGCGCGCGCAAAAGAGCGCAACCCGAAAGGCCTGAGCGAAACGAAACGACCGATGAC
GAACGGAGACCCTCTCTCGC

Downstream 100 bases:

>100_bases
AAGGGGCGGGGACACTGATGCACCCATACACCATCAGACTCAAGACAGGGCTTTTCATCGCTGCCGCTGCCTTCGGCTTG
CTGCTCGCCGATGTCAGCGC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAARNPPDNPYLAARQEWNERYGSYVKAAATWRVVGIVAMLMAVIGFAYALFESTQVKLVPYIVEVDKLGTAVNAGFPQQ
IEYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYALLRTSDPATQKINDWFRSNSPFEKARTTTVAIEVNNIVALS
SQTYQIDWTEFERDRKGKQTGEHRFRGIATVTLTPPQDEQTIRLNPIGLYLRDFDWTAQL

Sequences:

>Translated_220_residues
MAARNPPDNPYLAARQEWNERYGSYVKAAATWRVVGIVAMLMAVIGFAYALFESTQVKLVPYIVEVDKLGTAVNAGFPQQ
IEYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYALLRTSDPATQKINDWFRSNSPFEKARTTTVAIEVNNIVALS
SQTYQIDWTEFERDRKGKQTGEHRFRGIATVTLTPPQDEQTIRLNPIGLYLRDFDWTAQL
>Mature_219_residues
AARNPPDNPYLAARQEWNERYGSYVKAAATWRVVGIVAMLMAVIGFAYALFESTQVKLVPYIVEVDKLGTAVNAGFPQQI
EYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYALLRTSDPATQKINDWFRSNSPFEKARTTTVAIEVNNIVALSS
QTYQIDWTEFERDRKGKQTGEHRFRGIATVTLTPPQDEQTIRLNPIGLYLRDFDWTAQL

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 24959; Mature: 24828

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARNPPDNPYLAARQEWNERYGSYVKAAATWRVVGIVAMLMAVIGFAYALFESTQVKLV
CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
PYIVEVDKLGTAVNAGFPQQIEYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYAL
HEEEEHHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LRTSDPATQKINDWFRSNSPFEKARTTTVAIEVNNIVALSSQTYQIDWTEFERDRKGKQT
HCCCCCHHHHHHHHHHCCCCHHHHCEEEEEEEECCEEEECCCEEEEEHHHHHHHHCCCCC
GEHRFRGIATVTLTPPQDEQTIRLNPIGLYLRDFDWTAQL
HHHHHCEEEEEEECCCCCCCEEEEEEEEEEEECCCEECCC
>Mature Secondary Structure 
AARNPPDNPYLAARQEWNERYGSYVKAAATWRVVGIVAMLMAVIGFAYALFESTQVKLV
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
PYIVEVDKLGTAVNAGFPQQIEYADPRVVRATLGSFVSNFRSVTPDAVVQKQYIDRTYAL
HEEEEHHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LRTSDPATQKINDWFRSNSPFEKARTTTVAIEVNNIVALSSQTYQIDWTEFERDRKGKQT
HCCCCCHHHHHHHHHHCCCCHHHHCEEEEEEEECCEEEECCCEEEEEHHHHHHHHCCCCC
GEHRFRGIATVTLTPPQDEQTIRLNPIGLYLRDFDWTAQL
HHHHHCEEEEEEECCCCCCCEEEEEEEEEEEECCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]