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The map label for this gene is secD [H]

Identifier: 91790474

GI number: 91790474

Start: 4927781

End: 4929655

Strand: Reverse

Name: secD [H]

Synonym: Bpro_4645

Alternate gene names: 91790474

Gene position: 4929655-4927781 (Counterclockwise)

Preceding gene: 91790475

Following gene: 91790473

Centisome position: 94.8

GC content: 62.19

Gene sequence:

>1875_bases
ATGAATCGTTATCCGGCCTGGAAGTACGCCATTATTGTGGTCGCGCTATTGATCGCAGCCCTGTACACGCTGCCCAACTT
TTTTGGCGAAGCGCCGGCAGTGCAGATTTCCAGCGGCAAGTCCACGGTCAAGATTGACACGACGACGATGGCGAGGGTGG
AACAGGCGCTCAAGGATGTGGGCATCACGGCGGATGTCATCGCCCTGGAGGGTACTTCGGTCAAGGCACGCTTTGGCGAT
ACCGATACCCAGCTCAAGGCGAAAGACGCCGTCCAGAAGGCGCTGTCGCCCGATCCCGCGAATCCGTCGTATGTGGTCGC
GCTCAACCTGCTGTCGCGCTCACCCGCCTGGCTGACTTCGCTGCACGCGTTTCCCATGTACCTGGGGCTGGACCTGCGTG
GCGGCGTGCATTTCATGCTGCAGGTGGACATGCAGGCGGCGCTGACCAAACGGGCCGAGTCCCTGTCGGGCGACATTCGC
CTGTCGCTGCGCGAAAAAAATATCCGCCATGGTGGCATCAGCCGCAATGCCCAGGCCATTGACATCAAGGTTCGCGACAG
CGAGACCCTGGCCTCTGCCAAGGCGCTGATCCAGGATCAGTTTCCGGACCTGCAGACCGTCGATGTCCCGGAGGGCACGG
AGTACAAGCTGACGGCCAGCATCAAGCCCGAGGCGGCGCGCCGGATCCAGGATCAGGCGCTCAAGCAGAACATGGTCACG
CTGCACAACCGGATCAACGAGCTGGGCGTGGCCGAGCCGGTGATTCAGCAGCAGGGCCTGGACCGTATCGTGGTGCAATT
GCCGGGTGTTCAGGATACGGCCAAGGCCAAGGACATCCTGGGGCGTACAGCGACACTGGAGATGCGTCTCGTGGAAGACA
GCGCCGAGGCGCGCGCTGCGGAAAACAACACCGGTGCCGTGCCGTTTGGCACCGAGCGCTTTTTCGAGCGCAACGGGCAG
GCGGTGATTGTCAAGAAACAGGTGATCCTGACCGGCGAGAACCTGACGGATGCCCAGCCCGGCTTTGACTCGCAGAACCA
GCAGCCCAAAGTGGATCTGACGGTCGATGCCAAGGGCGGCCGCATCATGCGCGACACCAGCCGCGAGAACCTGAAGAAAC
GCATGGCCATCCTGCTGTTTGAAAAAGGCAAGGGCGAGGTCCTGACCGCGCCGGTCATCCAGAGTGAACTCGGCAACCGC
TTCCAGATTTCCGGCTCCATGAGTGTGAGCGAAGCCAATGACCTGGCCTTGCTGCTGCGCGCGGGCTCCCTCGCCGCGCC
CATGGAAATCATTGAAGAGCGCACCATCGGCCCGACGCTGGGTGCCGACAATATTTCCAAGGGCTTTCACAGCGTGTCCT
GGGGTTTTGTCGTGATCGTGGCCTTCATGGCGGCCTACTACATGCTGTTCGGCCTGATCTCCGGCCTGGCGCTGGCGGTG
AACCTGCTGCTGCTCGTCGCGGTGCTTTCCATGCTGCAGGCGACCCTGACCTTGCCCGGCATGGCGGCCATGGCACTGGC
ACTGGGCATGGCCATCGACTCCAACGTGCTGATCAATGAGCGCGTGCGCGAGGAATTGCGCAATGGCGCCTCGGCCCAGG
CGGCCATTCATGCGGGGTATGAGCGGGCCTGGGCCACCATCCTGGACTCCAACACCTCGACCCTGATTGTGGGCCTGGCA
TTGCTGGCCTTTGGTTCCGGCCCGGTACGCGGTTTTGCGGTGGTGCACTGCATCGGCATTTTGACCAGCATGTTCTCTGC
GGTATTTTTCTCGCGTGGCCTGGTCAATCTCTGGTATGGCCGGCAGAAAAAGCTCAAGACGGTGTCCATCGGCACGGTGT
GGCGGCCCGACGCGTCCGGCGCTGTGGCGAAATGA

Upstream 100 bases:

>100_bases
GCCCAAGGGCGCTATCGGCGCCGCGAAGTAAGGTCTTGCTGACCCCCTGAGGCCCGCAGGGCCTCACTTTGTTCATCCGT
CCACCAGGAACAGCCCCCTC

Downstream 100 bases:

>100_bases
CCCCGGCTTCTTGTTTCTGAGCTTCCCAAGGACCCTCGATGGAATTTTTCAAAATCCGGCGTGACATTCCGTTCATGCGG
CACGCCCTGATCTTCAATGT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MNRYPAWKYAIIVVALLIAALYTLPNFFGEAPAVQISSGKSTVKIDTTTMARVEQALKDVGITADVIALEGTSVKARFGD
TDTQLKAKDAVQKALSPDPANPSYVVALNLLSRSPAWLTSLHAFPMYLGLDLRGGVHFMLQVDMQAALTKRAESLSGDIR
LSLREKNIRHGGISRNAQAIDIKVRDSETLASAKALIQDQFPDLQTVDVPEGTEYKLTASIKPEAARRIQDQALKQNMVT
LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDSAEARAAENNTGAVPFGTERFFERNGQ
AVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEVLTAPVIQSELGNR
FQISGSMSVSEANDLALLLRAGSLAAPMEIIEERTIGPTLGADNISKGFHSVSWGFVVIVAFMAAYYMLFGLISGLALAV
NLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERVREELRNGASAQAAIHAGYERAWATILDSNTSTLIVGLA
LLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLKTVSIGTVWRPDASGAVAK

Sequences:

>Translated_624_residues
MNRYPAWKYAIIVVALLIAALYTLPNFFGEAPAVQISSGKSTVKIDTTTMARVEQALKDVGITADVIALEGTSVKARFGD
TDTQLKAKDAVQKALSPDPANPSYVVALNLLSRSPAWLTSLHAFPMYLGLDLRGGVHFMLQVDMQAALTKRAESLSGDIR
LSLREKNIRHGGISRNAQAIDIKVRDSETLASAKALIQDQFPDLQTVDVPEGTEYKLTASIKPEAARRIQDQALKQNMVT
LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDSAEARAAENNTGAVPFGTERFFERNGQ
AVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEVLTAPVIQSELGNR
FQISGSMSVSEANDLALLLRAGSLAAPMEIIEERTIGPTLGADNISKGFHSVSWGFVVIVAFMAAYYMLFGLISGLALAV
NLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERVREELRNGASAQAAIHAGYERAWATILDSNTSTLIVGLA
LLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLKTVSIGTVWRPDASGAVAK
>Mature_624_residues
MNRYPAWKYAIIVVALLIAALYTLPNFFGEAPAVQISSGKSTVKIDTTTMARVEQALKDVGITADVIALEGTSVKARFGD
TDTQLKAKDAVQKALSPDPANPSYVVALNLLSRSPAWLTSLHAFPMYLGLDLRGGVHFMLQVDMQAALTKRAESLSGDIR
LSLREKNIRHGGISRNAQAIDIKVRDSETLASAKALIQDQFPDLQTVDVPEGTEYKLTASIKPEAARRIQDQALKQNMVT
LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDSAEARAAENNTGAVPFGTERFFERNGQ
AVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEVLTAPVIQSELGNR
FQISGSMSVSEANDLALLLRAGSLAAPMEIIEERTIGPTLGADNISKGFHSVSWGFVVIVAFMAAYYMLFGLISGLALAV
NLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERVREELRNGASAQAAIHAGYERAWATILDSNTSTLIVGLA
LLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLKTVSIGTVWRPDASGAVAK

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=627, Percent_Identity=45.2950558213716, Blast_Score=509, Evalue=1e-145,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67307; Mature: 67307

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPAWKYAIIVVALLIAALYTLPNFFGEAPAVQISSGKSTVKIDTTTMARVEQALKDV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHC
GITADVIALEGTSVKARFGDTDTQLKAKDAVQKALSPDPANPSYVVALNLLSRSPAWLTS
CCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHH
LHAFPMYLGLDLRGGVHFMLQVDMQAALTKRAESLSGDIRLSLREKNIRHGGISRNAQAI
HHHHHHHEEEECCCCEEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEE
DIKVRDSETLASAKALIQDQFPDLQTVDVPEGTEYKLTASIKPEAARRIQDQALKQNMVT
EEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDSAEARAA
HHHHHHHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCHHHHCC
ENNTGAVPFGTERFFERNGQAVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTVDAKGG
CCCCCCCCCCHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
RIMRDTSRENLKKRMAILLFEKGKGEVLTAPVIQSELGNRFQISGSMSVSEANDLALLLR
EEEECCCHHHHHHHHEEEEEECCCCCEEECHHHHHHCCCEEEEECCCCCCCCCCEEEEEE
AGSLAAPMEIIEERTIGPTLGADNISKGFHSVSWGFVVIVAFMAAYYMLFGLISGLALAV
CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERVREELRNGASAQAAIHAGY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCHHHHHHHHH
ERAWATILDSNTSTLIVGLALLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYG
HHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
RQKKLKTVSIGTVWRPDASGAVAK
CCCCEEEEEECEEECCCCCCCCCC
>Mature Secondary Structure
MNRYPAWKYAIIVVALLIAALYTLPNFFGEAPAVQISSGKSTVKIDTTTMARVEQALKDV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHC
GITADVIALEGTSVKARFGDTDTQLKAKDAVQKALSPDPANPSYVVALNLLSRSPAWLTS
CCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHH
LHAFPMYLGLDLRGGVHFMLQVDMQAALTKRAESLSGDIRLSLREKNIRHGGISRNAQAI
HHHHHHHEEEECCCCEEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEE
DIKVRDSETLASAKALIQDQFPDLQTVDVPEGTEYKLTASIKPEAARRIQDQALKQNMVT
EEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
LHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDILGRTATLEMRLVEDSAEARAA
HHHHHHHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCCHHHHCC
ENNTGAVPFGTERFFERNGQAVIVKKQVILTGENLTDAQPGFDSQNQQPKVDLTVDAKGG
CCCCCCCCCCHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
RIMRDTSRENLKKRMAILLFEKGKGEVLTAPVIQSELGNRFQISGSMSVSEANDLALLLR
EEEECCCHHHHHHHHEEEEEECCCCCEEECHHHHHHCCCEEEEECCCCCCCCCCEEEEEE
AGSLAAPMEIIEERTIGPTLGADNISKGFHSVSWGFVVIVAFMAAYYMLFGLISGLALAV
CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERVREELRNGASAQAAIHAGY
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCHHHHHHHHH
ERAWATILDSNTSTLIVGLALLAFGSGPVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYG
HHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
RQKKLKTVSIGTVWRPDASGAVAK
CCCCEEEEEECEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]