Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91790400

Identifier: 91790400

GI number: 91790400

Start: 4841179

End: 4841997

Strand: Reverse

Name: 91790400

Synonym: Bpro_4571

Alternate gene names: NA

Gene position: 4841997-4841179 (Counterclockwise)

Preceding gene: 91790401

Following gene: 91790398

Centisome position: 93.11

GC content: 64.84

Gene sequence:

>819_bases
ATGCAAGCCACCCACAACACCACCTACGACGGCGCCTGCGACTGCCATGTGCACATTTACGAAGACAAGTACCCCCTGAT
CCCGAATGTGGCGGTGATTCCGCCGCACTCGCCGGTCTCAAGCTACCGCGAGGTGCAGCAGGCGCTGGGCCTTTCGCGTG
CCATCATCGTGCAGCCCACGGGCTACGGTTTTGACAACAGCTGCACCCTGGATGCGCTGGCCCAGCTTGGTGACGTTGCC
CGCGGCATTGCGCTGGTCGCGCCGGATGCGCCCGACGCGGAGTTCCAGCGGCTGCATGACGGCGGCATGCGCGGCGTGCG
TTTCATGATGCTGGGCGGCATGCTGCCCTGGGAATCGCTGGAGCCCATGGCGGCACGGCTGGAGCACTTCGGCTGGATGA
TCAACCTGCAGCTCGATGGCCGCAAGCTGCCGGACCATGAGGCGGTGCTGAAACGCCTGCCCTGCCAGGTGGTGATTGAT
CACAACGGCAAATTCCTCGAGCCCGTCAGTCCGGACCATGCCTCCTTCCAGTCGCTGCTGCGCATACTCGATACCGGCCG
CGCCTGGATCAAGCTGTCGGCGCCTTACGAAACTTCCCAAACCGGCGCGCCCGGCTATGACGATGTCAGCCTGCTGGCGC
GCACCCTGGCCGAGAAGTTTCCCGAGCGCTGCCTCTGGGCCAGCAACTGGCCGCATCCGGGGCGCAACCCCGCGCCGTCG
AATGTTGCGATGTACGACCTGCTGTTTTCCTGGGCAGCCAGCGACGCGGCGCGCCAGAAAATCCTGGTGGACAACCCGGC
ACAGCTGTACGGGTTTTAG

Upstream 100 bases:

>100_bases
CGCTGGCAACAGGCGTTTGGCACGACGCAGCCAGCCTGAGCCCGGGCGCTCACGGCCGGTCAGACTTTTTTGACCTCCAC
GCAAATCCCGGAAGACTTTT

Downstream 100 bases:

>100_bases
ACAGTCGCTATAAAAATGTAGCTGATTGCGCGCGTCGGATAGGGGTTGAGGCCTTCAATGACGATGGCTTCACCGGTTGG
CGGTGCTGTTGCCGCCGCAG

Product: amidohydrolase 2

Products: NA

Alternate protein names: 2-Pyrone-4 6-Dicarboxylic Acid Hydrolase; Amidohydrolase; Dicarboxylic Acid Hydrolase; Metal-Dependent Hydrolase; 2-Pyrone-4 6-Dicarbaxylate Hydrolase; Amidohydrolase Family Protein; 2-Pyrone-4 6-Dicarboxylate Hydrolase; 2-Pyrone-4 6-Dicarboxylate Lactonase; (2-Pyrone-4 6-)Dicarboxylic Acid Hydrolase; Amidase; Amidohydrolase 2 Family; Hydrolase Amidohydrolase 2 Motif; Amidohydrolase Family; Aminohydrolase; PDC Hydrolase-Like Protein; Metal-Dependent Hydrolase Of TIM-Barrel Fold; Metal-Dependent Transmembrane Hydrolase; Transcriptional Regulator GntR; Metal-Dependent Hydrolase Of TIM-Barrel Fold Family; Metal-Dependent Hydrolase Protein; Exported Protein

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MQATHNTTYDGACDCHVHIYEDKYPLIPNVAVIPPHSPVSSYREVQQALGLSRAIIVQPTGYGFDNSCTLDALAQLGDVA
RGIALVAPDAPDAEFQRLHDGGMRGVRFMMLGGMLPWESLEPMAARLEHFGWMINLQLDGRKLPDHEAVLKRLPCQVVID
HNGKFLEPVSPDHASFQSLLRILDTGRAWIKLSAPYETSQTGAPGYDDVSLLARTLAEKFPERCLWASNWPHPGRNPAPS
NVAMYDLLFSWAASDAARQKILVDNPAQLYGF

Sequences:

>Translated_272_residues
MQATHNTTYDGACDCHVHIYEDKYPLIPNVAVIPPHSPVSSYREVQQALGLSRAIIVQPTGYGFDNSCTLDALAQLGDVA
RGIALVAPDAPDAEFQRLHDGGMRGVRFMMLGGMLPWESLEPMAARLEHFGWMINLQLDGRKLPDHEAVLKRLPCQVVID
HNGKFLEPVSPDHASFQSLLRILDTGRAWIKLSAPYETSQTGAPGYDDVSLLARTLAEKFPERCLWASNWPHPGRNPAPS
NVAMYDLLFSWAASDAARQKILVDNPAQLYGF
>Mature_272_residues
MQATHNTTYDGACDCHVHIYEDKYPLIPNVAVIPPHSPVSSYREVQQALGLSRAIIVQPTGYGFDNSCTLDALAQLGDVA
RGIALVAPDAPDAEFQRLHDGGMRGVRFMMLGGMLPWESLEPMAARLEHFGWMINLQLDGRKLPDHEAVLKRLPCQVVID
HNGKFLEPVSPDHASFQSLLRILDTGRAWIKLSAPYETSQTGAPGYDDVSLLARTLAEKFPERCLWASNWPHPGRNPAPS
NVAMYDLLFSWAASDAARQKILVDNPAQLYGF

Specific function: Unknown

COG id: COG3618

COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30088; Mature: 30088

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQATHNTTYDGACDCHVHIYEDKYPLIPNVAVIPPHSPVSSYREVQQALGLSRAIIVQPT
CCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECCC
GYGFDNSCTLDALAQLGDVARGIALVAPDAPDAEFQRLHDGGMRGVRFMMLGGMLPWESL
CCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHC
EPMAARLEHFGWMINLQLDGRKLPDHEAVLKRLPCQVVIDHNGKFLEPVSPDHASFQSLL
CHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHH
RILDTGRAWIKLSAPYETSQTGAPGYDDVSLLARTLAEKFPERCLWASNWPHPGRNPAPS
HHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NVAMYDLLFSWAASDAARQKILVDNPAQLYGF
CHHHHHHHHHHHHHHHHHCEEEECCCHHHCCC
>Mature Secondary Structure
MQATHNTTYDGACDCHVHIYEDKYPLIPNVAVIPPHSPVSSYREVQQALGLSRAIIVQPT
CCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECCC
GYGFDNSCTLDALAQLGDVARGIALVAPDAPDAEFQRLHDGGMRGVRFMMLGGMLPWESL
CCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHC
EPMAARLEHFGWMINLQLDGRKLPDHEAVLKRLPCQVVIDHNGKFLEPVSPDHASFQSLL
CHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHH
RILDTGRAWIKLSAPYETSQTGAPGYDDVSLLARTLAEKFPERCLWASNWPHPGRNPAPS
HHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NVAMYDLLFSWAASDAARQKILVDNPAQLYGF
CHHHHHHHHHHHHHHHHHCEEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA