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The map label for this gene is rsmB [H]

Identifier: 91790269

GI number: 91790269

Start: 4684495

End: 4685832

Strand: Reverse

Name: rsmB [H]

Synonym: Bpro_4436

Alternate gene names: 91790269

Gene position: 4685832-4684495 (Counterclockwise)

Preceding gene: 91790270

Following gene: 91790268

Centisome position: 90.11

GC content: 65.84

Gene sequence:

>1338_bases
ATGCAAGACAACCCGACCCCAATTCCCCTGTGGCGCCAGCTTCAGGGGGCTGCTTCCCTTTTGATGGCCGTGCGCGATGG
CCAGTCCATGACAGCCGCGCTTGAAGACGTCGATGCCGCACTGCGGCCCGGCGTCCAGTCGCTGGGCTTTCACACGCTGC
GCTGGCTGGGCCGCGCCGAAGCGCTGCGCCAGCAACTGGCCAAACGCCCACCGCCACCCGAGGCCGATGCCTTGCTGTGC
GTGGCCCTGGCGCTGATCTGGACGGAGCACGATGCGCCCTACACCGCGCACACCCTGGTTGACCAGGCGGTGGAAGCGGC
CAAGCGCGGCGACGCCACGCAGCACCAGGCCAGTTTCATCAATGGCTGCCTGCGGCGCTTCCTGCGCGAGCGGGACGACC
TGGTGGCGCGCAGCGAAAAAAGTCCCCAGGCCGTCTGGAACCACCCGCAGTGGTGGATAGACCGGGTGCGCAAGGATCAC
CCCGGCCAATGGCAGGCCATCCTGCAGGCCAACAACTCCCGGGCACCGCTGATTCTGCGGGTCAACGAACGAAAGACGAC
GCAAGCCCAGTATTTGCTGGCACTGTCTGCTGTGAATATTGCAGCGACCCCGGTGGGAAAACAGGGTGTGATCCTGGCCA
GCGCCCAGCCTGTGCCGTCGCTGCCGGGTTTTGCCGAGGGGCATTTTTCGGTACAGGATGCCGCTGCGCAGCTCGCCGCG
CCGCTGTTGCTCGAGGGGCTGAACACCGGCGACGGGCAGGGGGCGCGCCCGAGGATCCTGGACGCCTGCGCCGCGCCCGG
CGGTAAAACCGCCCACCTGCTGGAGCTGGCCGACTGCGAGGTCACCGCGCTCGACATCGACGCCCGCCGTTGCACGCGCA
TCGCACAAAACCTGGGGCGCCTGGGCCTGCAGGCGCACATCGAGGTGGCCGATGCAGGCCGCCCGCAGGACTGGTGGGAC
GGCCAGCCTTACGACGGCATCCTGCTCGACGCGCCTTGTACTGCCTCGGGCATTGTGCGGCGCCATCCCGACGTGCGCTG
GCTGCGCCGGCCGACCGACATTGCCCAGCTGGCCGGCATCCAGGCGCATTTGCTCCAGGCGCTGTGGCCGCTGCTCAAGC
CGGGTGGCCGGCTGTTGTATTGCACCTGCTCGGTTTTCCGGGCGGAAGGCGACAACCAGATACAAACGTTTGTTGCACAC
CACACAGATGCTTTATTAATGCCATCGCCAGGGCATTTGCTGCCCCAAAGTGGGGCCGAAGCGACAGTCTTCCCGGACAA
TTTGATGCGTGAGCACGACGGTTTTTATTACGCCATTCTTGAAAAACGCAACCCTTAG

Upstream 100 bases:

>100_bases
AGCCGTGGAACCGGCTTTGCCGGGCCACAGGCGGGCGGCCCCCTCGGGGGGCAGGGCGCTACACGCAGTGAGCAACCGTG
GGGGCTGGTCTAATACCCCG

Downstream 100 bases:

>100_bases
CACCGTTGCGCGCTTCCTGCTGGGTTTTTGCCTGTGCGCGCTGCTGGCCTGCGGGGCAGGGGCGGCGTCGGCCACCGAGA
TATCCCAACTGCGCGTCGAA

Product: sun protein

Products: NA

Alternate protein names: 16S rRNA m5C967 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MQDNPTPIPLWRQLQGAASLLMAVRDGQSMTAALEDVDAALRPGVQSLGFHTLRWLGRAEALRQQLAKRPPPPEADALLC
VALALIWTEHDAPYTAHTLVDQAVEAAKRGDATQHQASFINGCLRRFLRERDDLVARSEKSPQAVWNHPQWWIDRVRKDH
PGQWQAILQANNSRAPLILRVNERKTTQAQYLLALSAVNIAATPVGKQGVILASAQPVPSLPGFAEGHFSVQDAAAQLAA
PLLLEGLNTGDGQGARPRILDACAAPGGKTAHLLELADCEVTALDIDARRCTRIAQNLGRLGLQAHIEVADAGRPQDWWD
GQPYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAGIQAHLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAH
HTDALLMPSPGHLLPQSGAEATVFPDNLMREHDGFYYAILEKRNP

Sequences:

>Translated_445_residues
MQDNPTPIPLWRQLQGAASLLMAVRDGQSMTAALEDVDAALRPGVQSLGFHTLRWLGRAEALRQQLAKRPPPPEADALLC
VALALIWTEHDAPYTAHTLVDQAVEAAKRGDATQHQASFINGCLRRFLRERDDLVARSEKSPQAVWNHPQWWIDRVRKDH
PGQWQAILQANNSRAPLILRVNERKTTQAQYLLALSAVNIAATPVGKQGVILASAQPVPSLPGFAEGHFSVQDAAAQLAA
PLLLEGLNTGDGQGARPRILDACAAPGGKTAHLLELADCEVTALDIDARRCTRIAQNLGRLGLQAHIEVADAGRPQDWWD
GQPYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAGIQAHLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAH
HTDALLMPSPGHLLPQSGAEATVFPDNLMREHDGFYYAILEKRNP
>Mature_445_residues
MQDNPTPIPLWRQLQGAASLLMAVRDGQSMTAALEDVDAALRPGVQSLGFHTLRWLGRAEALRQQLAKRPPPPEADALLC
VALALIWTEHDAPYTAHTLVDQAVEAAKRGDATQHQASFINGCLRRFLRERDDLVARSEKSPQAVWNHPQWWIDRVRKDH
PGQWQAILQANNSRAPLILRVNERKTTQAQYLLALSAVNIAATPVGKQGVILASAQPVPSLPGFAEGHFSVQDAAAQLAA
PLLLEGLNTGDGQGARPRILDACAAPGGKTAHLLELADCEVTALDIDARRCTRIAQNLGRLGLQAHIEVADAGRPQDWWD
GQPYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAGIQAHLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAH
HTDALLMPSPGHLLPQSGAEATVFPDNLMREHDGFYYAILEKRNP

Specific function: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=289, Percent_Identity=29.757785467128, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI76150623, Length=289, Percent_Identity=29.757785467128, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI32698918, Length=151, Percent_Identity=35.7615894039735, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI301336155, Length=209, Percent_Identity=31.1004784688995, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI39995082, Length=209, Percent_Identity=31.1004784688995, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI40316918, Length=188, Percent_Identity=31.9148936170213, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI23199998, Length=270, Percent_Identity=27.4074074074074, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI270288816, Length=270, Percent_Identity=27.4074074074074, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI8922322, Length=270, Percent_Identity=27.4074074074074, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI270288818, Length=270, Percent_Identity=27.4074074074074, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI2367212, Length=443, Percent_Identity=37.2460496613996, Blast_Score=251, Evalue=8e-68,
Organism=Escherichia coli, GI87081985, Length=278, Percent_Identity=27.6978417266187, Blast_Score=92, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17536757, Length=253, Percent_Identity=28.0632411067194, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI25143471, Length=219, Percent_Identity=28.7671232876712, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324268, Length=236, Percent_Identity=30.0847457627119, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6319447, Length=182, Percent_Identity=32.4175824175824, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI22024126, Length=235, Percent_Identity=29.7872340425532, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI21355201, Length=213, Percent_Identity=30.9859154929577, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21356513, Length=147, Percent_Identity=36.734693877551, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24668781, Length=149, Percent_Identity=36.241610738255, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: =2.1.1.176 [H]

Molecular weight: Translated: 48725; Mature: 48725

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDNPTPIPLWRQLQGAASLLMAVRDGQSMTAALEDVDAALRPGVQSLGFHTLRWLGRAE
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ALRQQLAKRPPPPEADALLCVALALIWTEHDAPYTAHTLVDQAVEAAKRGDATQHQASFI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
NGCLRRFLRERDDLVARSEKSPQAVWNHPQWWIDRVRKDHPGQWQAILQANNSRAPLILR
HHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCEEEE
VNERKTTQAQYLLALSAVNIAATPVGKQGVILASAQPVPSLPGFAEGHFSVQDAAAQLAA
ECCCCHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
PLLLEGLNTGDGQGARPRILDACAAPGGKTAHLLELADCEVTALDIDARRCTRIAQNLGR
HHHHHCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHHHH
LGLQAHIEVADAGRPQDWWDGQPYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAGI
CCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCHHHHCCCHHHHHHHHH
QAHLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAHHTDALLMPSPGHLLPQSGAE
HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCC
ATVFPDNLMREHDGFYYAILEKRNP
EEECCHHHHHHCCCEEEEEEECCCC
>Mature Secondary Structure
MQDNPTPIPLWRQLQGAASLLMAVRDGQSMTAALEDVDAALRPGVQSLGFHTLRWLGRAE
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ALRQQLAKRPPPPEADALLCVALALIWTEHDAPYTAHTLVDQAVEAAKRGDATQHQASFI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
NGCLRRFLRERDDLVARSEKSPQAVWNHPQWWIDRVRKDHPGQWQAILQANNSRAPLILR
HHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCEEEE
VNERKTTQAQYLLALSAVNIAATPVGKQGVILASAQPVPSLPGFAEGHFSVQDAAAQLAA
ECCCCHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
PLLLEGLNTGDGQGARPRILDACAAPGGKTAHLLELADCEVTALDIDARRCTRIAQNLGR
HHHHHCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHHHH
LGLQAHIEVADAGRPQDWWDGQPYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAGI
CCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCHHHHCCCHHHHHHHHH
QAHLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAHHTDALLMPSPGHLLPQSGAE
HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCC
ATVFPDNLMREHDGFYYAILEKRNP
EEECCHHHHHHCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]