Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91790263

Identifier: 91790263

GI number: 91790263

Start: 4675106

End: 4677736

Strand: Direct

Name: 91790263

Synonym: Bpro_4430

Alternate gene names: NA

Gene position: 4675106-4677736 (Clockwise)

Preceding gene: 91790259

Following gene: 91790264

Centisome position: 89.9

GC content: 52.72

Gene sequence:

>2631_bases
ATGTTCAATGATCAAGCCCTGCGGCAGTATTTTGAGGCGAGGGCTCTTGGAACAACTGCACGCAATGTCATTCTCAAGAT
TAGAGAGAGCGATCCCGTTCGGAATGTGAGTAACCGGGCGGGGAACATGGCCGGCACTCATGCTAGTTCCAAAATGCAGC
GCACGATCCAATGGGAATCATGGTCGGGCGAGCGAGCGTTGGCGGTACTCTGGGAATTTGATCCCGATGCCTTAGAGTTT
TGGGATCAAACGTACGATCTCAAAATTACTTATACGCTCCCTACAGGGCGAAGGACAGGCCTTCGAACGGTGCCGGATTA
CCTGCTTCTAGCAAAAAATTTCTGCGGGTTCGTTGACTTCAAAACCTCAGCAGAGTTGCGAGAACTGGCAGTCGATCAGC
CAACGCGCTACGTGCAGATTGCCGATGGCAAGTGGGATCAACCGCCGGCACGAGAGGCAAGTCAAAGCTTAGGCCTTGAC
TACCAACTTCTCTCCGATCTGGACATACCGCACGTGTTGGTGCGAAACCTTGAATTCTTGCGTCCTCGCATGCTGCATGG
ACTAAGCACGCCGGAGACATCAATCGATGCATTGAAACAGTCACTTATCGAGCAAAAGAAGATCGTTCTTTCCGAGGCCA
TCAACATGGTCGGTGACCCCAATATCATTTACTGGGGGCATTTCTGGAGTCATTGGTTTCTTAGCCTCAATACCGAGCCT
CTTGCACATCCAGATTCATCCTGCGTCTATCTCGATAAGTTGGCGAGAGATACGTTCGGTGCAGTCGAACGCTGCTATCA
ACCGCTGCTATCCACCACACTAGATGCCGACTCGATTCCTGATCGAGCTTTTATCCGCTGGGACAACAGCCTCTTTCAAC
TGCTGAATCGCAGCACGACCCATGTCTATCTGCAACCCGGAAATGGTCCACTGGTAACTATTCTCAGGCGTGACTTTGCC
GGATTGGTTTCCTCTAACGCAATTACCGCGAATGTTCCTGCGCGCCTACTAATCGCCTCCGGACTGGACATTCTGAAGTC
CTCGACGTCGAGTTCTCAAATGCGCGCTTTGGAAAAGTTAAAAATTCTTGAGCGCCATTGGAGTGGTGAACAGGTCATTG
GAGATGTTGTCGCAGAGCGAACACTGCGAGACTGGGTCGCGTGCTTTCGAGGGGCAGAAGAAGAATACGGCAACGGGTTT
CTTGGCCTCATCAACAAGAACCACCTGAAAGGCAACCGCACCGCACGCACTAGCAAAGAGGAGCTTGCGCTTGTTGAGGA
GGCATTCGAATGGCTCAAAGTGGAAGTAGCGCGCCCACCTGCGGCCGGATATGCAGTCTATGTCGCATCTTGCCATGAGG
CAGCAATTATTCCTCGATCAGAGAATTCTTTCATGAAGCTGTGGGGGAAAAATGATAAGTATGAGGAAACCCTGACCCGG
GAAGGCAAGCGAGCCGCTTACCCACATAAGGCACCTCACCACAAAAATCCACAGTCGATATTACAAGGCCCCCCCGAAGG
CGACAGTCCATTCAATCAAGTGCACGTCGACCATACCCAGTTAGATTTTTTTTGCCGACGGGAAAATTCTTCTGCGCTGC
TGGGAAAACCCTGGTTGAGTCTTGCCATCGATGCGTGCACCCGGTTAGTGCTTGGGTGGTGGCTGTCCATGTTGGCCCCC
AGCACAGCATCCGTTCTGATGGTGCTTCGAGACATGGTGAGGCGTCATGGAAAGCTTCCGCTTTACACCATCACCGACAG
CGGCAAAGATTTCTCCGCCACTCGCGTGAAGCAGTTTCTCGCCAGCCACCGCTGCGGACATGGCTTCCGACCAGCTGGGG
AACCACGCTTTGGCAATCCGGTGGAACGGCTGAATCTCGACATCTCTATGCATTTTTCTCAAGTCGTGTATGGGAGCAAC
AAAATATTTAAAACGCCCCGGATGAGCTCGGCAACGCACGACCCCAGAAATCTTGCCTACCTTACGATGGGTTCGAGCGC
GAGCAAGCTTGAGGAGCTCTTCTTCGACCTGTATCCACAGCGGCCGCACTCCGGTTTGGGCGAGTCTCCGGATAGCAAAC
TGCGATCCGCAGCCATCATGCAAGGAACTTCATGGGGAGTACCAACCCGTTTTGACGACCGTCTTCTTTTTCAAACGCTT
GCAACACCGCACAAGCATGGCGGTTTGGTAAGGCAGCGCGACGGCATTCGCTTAAACGGGCACAACTATTTCTCGCCATT
GCTGGTTGGCGGCGGCAATGGGAGGCATATGCGAGAGCTACCTCTCTACGATCCTGAAGATCCTACCTACATCCAGGCGC
GTGTAGATTCGCAATGGACAAGATGCGATTTGCTTGACTCACAGAGAAAGCGCTTGCCCTCGTCCGACCTTAAATACTAT
TTGTCGGAAAAGATTTTCCTCAATCGACACAGCACAAATAAGGACGACATCAGAGCGTACCAGGCAAGCCTGGGGAGTTT
TTATAAACGCACTGACGAAGACCGAGATCGAGACGCCATTGACAGTCTCGACGCGAGTCCTGCGGATCCTCCTGTGCAGC
CTGATACTCCAGCACTCCCTTTTCCGCCCATTCAGGCAGCCCCCGTTTCCAAGAGGCCGCGTCATGAATAG

Upstream 100 bases:

>100_bases
ATCCTCATCTCGGTGAGAGGCGACAGCGTGCATCCGAAGATTAACGGGGCCAGATCATGCGTCATGGTCGAGCACAGGCA
CCAATCAATACGTCCCCGCC

Downstream 100 bases:

>100_bases
TTCCACGATTGCACGCTTGGTCAAGCATGGGGAAAATTCTGATCCTCGAGTCGTCCAGTTTCGGGAGTATTTCATACTAC
ATGAGCGCTTCCAGAACATC

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase Catalytic Subunit; Transposase; TniA Transposase; TnsA Endonuclease; Integrase Core Domain Protein; Transposition Protein B; TniA-Like Transposition Protein; Transposase-Like Mu; Transposase For Transposon; Transposase TniA For Transposition Module Tni

Number of amino acids: Translated: 876; Mature: 876

Protein sequence:

>876_residues
MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWESWSGERALAVLWEFDPDALEF
WDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDFKTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLD
YQLLSDLDIPHVLVRNLEFLRPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP
LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTTHVYLQPGNGPLVTILRRDFA
GLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKLKILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGF
LGLINKNHLKGNRTARTSKEELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR
EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLSLAIDACTRLVLGWWLSMLAP
STASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFLASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSN
KIFKTPRMSSATHDPRNLAYLTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL
ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWTRCDLLDSQRKRLPSSDLKYY
LSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAIDSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE

Sequences:

>Translated_876_residues
MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWESWSGERALAVLWEFDPDALEF
WDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDFKTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLD
YQLLSDLDIPHVLVRNLEFLRPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP
LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTTHVYLQPGNGPLVTILRRDFA
GLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKLKILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGF
LGLINKNHLKGNRTARTSKEELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR
EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLSLAIDACTRLVLGWWLSMLAP
STASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFLASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSN
KIFKTPRMSSATHDPRNLAYLTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL
ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWTRCDLLDSQRKRLPSSDLKYY
LSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAIDSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE
>Mature_876_residues
MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWESWSGERALAVLWEFDPDALEF
WDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDFKTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLD
YQLLSDLDIPHVLVRNLEFLRPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP
LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTTHVYLQPGNGPLVTILRRDFA
GLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKLKILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGF
LGLINKNHLKGNRTARTSKEELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR
EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLSLAIDACTRLVLGWWLSMLAP
STASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFLASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSN
KIFKTPRMSSATHDPRNLAYLTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL
ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWTRCDLLDSQRKRLPSSDLKYY
LSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAIDSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 99004; Mature: 99004

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWES
CCCHHHHHHHHHHHHHCHHHCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHEEECC
WSGERALAVLWEFDPDALEFWDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDF
CCCCEEEEEEEECCCHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEC
KTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLDYQLLSDLDIPHVLVRNLEFL
CCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHH
RPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCC
LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTT
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCCC
HVYLQPGNGPLVTILRRDFAGLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKL
EEEEECCCCCEEEHHHHHHHHHHCCCCEEECCCHHHHHHCCHHHHHCCCCHHHHHHHHHH
KILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGFLGLINKNHLKGNRTARTSKE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCCCCCCCCCCHH
ELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR
HHHHHHHHHHHHEEEECCCCCCCEEEEEEECCCEEEEECCCCCCEEECCCCCCHHHHHHC
EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLS
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCHHHEEEEEECCCCCCEECCHHHH
LAIDACTRLVLGWWLSMLAPSTASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
ASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSNKIFKTPRMSSATHDPRNLAY
HHHCCCCCCCCCCCCCCCCHHHHHEEEEEEEHHHHHCCCCCEEECCCCCCCCCCCCCEEE
LTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL
EEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWT
CCCCCCCCCEEECCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCH
RCDLLDSQRKRLPSSDLKYYLSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAI
HHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
DSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFNDQALRQYFEARALGTTARNVILKIRESDPVRNVSNRAGNMAGTHASSKMQRTIQWES
CCCHHHHHHHHHHHHHCHHHCEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHEEECC
WSGERALAVLWEFDPDALEFWDQTYDLKITYTLPTGRRTGLRTVPDYLLLAKNFCGFVDF
CCCCEEEEEEEECCCHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEC
KTSAELRELAVDQPTRYVQIADGKWDQPPAREASQSLGLDYQLLSDLDIPHVLVRNLEFL
CCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHH
RPRMLHGLSTPETSIDALKQSLIEQKKIVLSEAINMVGDPNIIYWGHFWSHWFLSLNTEP
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCC
LAHPDSSCVYLDKLARDTFGAVERCYQPLLSTTLDADSIPDRAFIRWDNSLFQLLNRSTT
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCCC
HVYLQPGNGPLVTILRRDFAGLVSSNAITANVPARLLIASGLDILKSSTSSSQMRALEKL
EEEEECCCCCEEEHHHHHHHHHHCCCCEEECCCHHHHHHCCHHHHHCCCCHHHHHHHHHH
KILERHWSGEQVIGDVVAERTLRDWVACFRGAEEEYGNGFLGLINKNHLKGNRTARTSKE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCCCCCCCCCCHH
ELALVEEAFEWLKVEVARPPAAGYAVYVASCHEAAIIPRSENSFMKLWGKNDKYEETLTR
HHHHHHHHHHHHEEEECCCCCCCEEEEEEECCCEEEEECCCCCCEEECCCCCCHHHHHHC
EGKRAAYPHKAPHHKNPQSILQGPPEGDSPFNQVHVDHTQLDFFCRRENSSALLGKPWLS
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEECCHHHEEEEEECCCCCCEECCHHHH
LAIDACTRLVLGWWLSMLAPSTASVLMVLRDMVRRHGKLPLYTITDSGKDFSATRVKQFL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
ASHRCGHGFRPAGEPRFGNPVERLNLDISMHFSQVVYGSNKIFKTPRMSSATHDPRNLAY
HHHCCCCCCCCCCCCCCCCHHHHHEEEEEEEHHHHHCCCCCEEECCCCCCCCCCCCCEEE
LTMGSSASKLEELFFDLYPQRPHSGLGESPDSKLRSAAIMQGTSWGVPTRFDDRLLFQTL
EEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
ATPHKHGGLVRQRDGIRLNGHNYFSPLLVGGGNGRHMRELPLYDPEDPTYIQARVDSQWT
CCCCCCCCCEEECCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCH
RCDLLDSQRKRLPSSDLKYYLSEKIFLNRHSTNKDDIRAYQASLGSFYKRTDEDRDRDAI
HHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
DSLDASPADPPVQPDTPALPFPPIQAAPVSKRPRHE
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA