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The map label for this gene is nocR [H]

Identifier: 91790254

GI number: 91790254

Start: 4667324

End: 4668238

Strand: Reverse

Name: nocR [H]

Synonym: Bpro_4421

Alternate gene names: 91790254

Gene position: 4668238-4667324 (Counterclockwise)

Preceding gene: 91790260

Following gene: 91790253

Centisome position: 89.77

GC content: 59.02

Gene sequence:

>915_bases
ATGCTATATATGAAACCTACCTTGAATCTTCGGCAAGTCGAATCGTTCTATTCGGTTATGCGCACGGGCACCGTCGTAGC
GGCAGCGCGCCACATGAACGTCACCCAGCCGGTGGTCAGTCGCGCCATCAGCCTACTGGAAGCACGTATCGGATACAAGC
TCTTCGAACGTAAGGGGCGCAAGCTGGTCGCAACGCCTGAAGGCCATGCGTTCTACCGGGAAGCCGAGCCGATCTATGGC
AGCTTGGACCGACTCGCGCAGGTAGCCCAGGACATCCGTTTTCAGCGCGCAGGGGAACTGCGTATCGCGACCCTGCCCTC
ACTGTCTCAATCGCTGCTGCCCCGCGTGACTACGAGGTTCCTGTCGTCGCGACCAAACGTTTCTGTGTTCGTGCAAAGTC
TGCCGTCGCGGCAGGTCGCCGACCTGGTGGCCACACGTCAATTTGATATCGGCCTCATTGAGCTGCCCATGGCGCGTCCG
TCGATCTCCGTTGAGCCGCTGGCGCCAGCACGGTCGGTGGCCGTCATCCCGGCCGGCCATCGGCTGGCAAGCAAGAAGCA
GATCTCGGTGAAGGACTTGGCCGGCGAGCGGATGGTCCTGCTGTCTCAGCACAGCTTCCTGCGCTATCAAATCGACGACG
CTTTTTCTAAGCTGGGAGTGGCTCCGCACGTTGTCCTGGAAACGCCACACTCCAACATCGCGTGCGCATTCGCAGCTGCC
GGAGCAGGGATCACACTAGTGTCCCATTGGGCTGCGGAATCCTTTTCGGGGCCGAACGTCGTTGTGCGGCCAGTCAAGGA
AGAACTTACATCGCGATCGGCCATTATCTTTCCTTACCCTGGCGCCAGACTAATGCTGGCTGAGGCCTTCGTAAAGGACC
TTAAAGAGGAAATCCGTCAGTTCAAACAGCGATGA

Upstream 100 bases:

>100_bases
ATGAACGTCTCCTTTTAAGTCTGTTGCAGGTGTATGCATCGAATCGTATGCCGCTCTTCCCCAACAAACAATTTGAAAGT
TCGCCATACCTTATGCTCAA

Downstream 100 bases:

>100_bases
ATTGTCAGGAGCGGCATCGTTACTCTCCAATTTGGCGATAGACACCGCATACCACTGTTCCGATTTGAGTAAGAGGAAAC
AGAGATGGGTAAAAGAAAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLYMKPTLNLRQVESFYSVMRTGTVVAAARHMNVTQPVVSRAISLLEARIGYKLFERKGRKLVATPEGHAFYREAEPIYG
SLDRLAQVAQDIRFQRAGELRIATLPSLSQSLLPRVTTRFLSSRPNVSVFVQSLPSRQVADLVATRQFDIGLIELPMARP
SISVEPLAPARSVAVIPAGHRLASKKQISVKDLAGERMVLLSQHSFLRYQIDDAFSKLGVAPHVVLETPHSNIACAFAAA
GAGITLVSHWAAESFSGPNVVVRPVKEELTSRSAIIFPYPGARLMLAEAFVKDLKEEIRQFKQR

Sequences:

>Translated_304_residues
MLYMKPTLNLRQVESFYSVMRTGTVVAAARHMNVTQPVVSRAISLLEARIGYKLFERKGRKLVATPEGHAFYREAEPIYG
SLDRLAQVAQDIRFQRAGELRIATLPSLSQSLLPRVTTRFLSSRPNVSVFVQSLPSRQVADLVATRQFDIGLIELPMARP
SISVEPLAPARSVAVIPAGHRLASKKQISVKDLAGERMVLLSQHSFLRYQIDDAFSKLGVAPHVVLETPHSNIACAFAAA
GAGITLVSHWAAESFSGPNVVVRPVKEELTSRSAIIFPYPGARLMLAEAFVKDLKEEIRQFKQR
>Mature_304_residues
MLYMKPTLNLRQVESFYSVMRTGTVVAAARHMNVTQPVVSRAISLLEARIGYKLFERKGRKLVATPEGHAFYREAEPIYG
SLDRLAQVAQDIRFQRAGELRIATLPSLSQSLLPRVTTRFLSSRPNVSVFVQSLPSRQVADLVATRQFDIGLIELPMARP
SISVEPLAPARSVAVIPAGHRLASKKQISVKDLAGERMVLLSQHSFLRYQIDDAFSKLGVAPHVVLETPHSNIACAFAAA
GAGITLVSHWAAESFSGPNVVVRPVKEELTSRSAIIFPYPGARLMLAEAFVKDLKEEIRQFKQR

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=256, Percent_Identity=33.984375, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI157672245, Length=217, Percent_Identity=28.110599078341, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=25.5813953488372, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788887, Length=260, Percent_Identity=26.5384615384615, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787806, Length=301, Percent_Identity=23.9202657807309, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367136, Length=275, Percent_Identity=24.7272727272727, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693105, Length=236, Percent_Identity=23.728813559322, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787601, Length=129, Percent_Identity=34.1085271317829, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788296, Length=245, Percent_Identity=26.1224489795918, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=159, Percent_Identity=29.559748427673, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790399, Length=240, Percent_Identity=23.3333333333333, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=291, Percent_Identity=25.4295532646048, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=255, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789173, Length=277, Percent_Identity=26.7148014440433, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788748, Length=255, Percent_Identity=22.3529411764706, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788297, Length=260, Percent_Identity=21.5384615384615, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33627; Mature: 33627

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYMKPTLNLRQVESFYSVMRTGTVVAAARHMNVTQPVVSRAISLLEARIGYKLFERKGR
CEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KLVATPEGHAFYREAEPIYGSLDRLAQVAQDIRFQRAGELRIATLPSLSQSLLPRVTTRF
EEEECCCCCEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
LSSRPNVSVFVQSLPSRQVADLVATRQFDIGLIELPMARPSISVEPLAPARSVAVIPAGH
HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCC
RLASKKQISVKDLAGERMVLLSQHSFLRYQIDDAFSKLGVAPHVVLETPHSNIACAFAAA
HHCCCCCCCHHHHCCCEEEEEECCCCEEEEHHHHHHHCCCCCEEEEECCCCCEEEEEECC
GAGITLVSHWAAESFSGPNVVVRPVKEELTSRSAIIFPYPGARLMLAEAFVKDLKEEIRQ
CCCHHHHHHHHHHCCCCCCEEEECHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
FKQR
HHCC
>Mature Secondary Structure
MLYMKPTLNLRQVESFYSVMRTGTVVAAARHMNVTQPVVSRAISLLEARIGYKLFERKGR
CEEECCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KLVATPEGHAFYREAEPIYGSLDRLAQVAQDIRFQRAGELRIATLPSLSQSLLPRVTTRF
EEEECCCCCEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
LSSRPNVSVFVQSLPSRQVADLVATRQFDIGLIELPMARPSISVEPLAPARSVAVIPAGH
HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCC
RLASKKQISVKDLAGERMVLLSQHSFLRYQIDDAFSKLGVAPHVVLETPHSNIACAFAAA
HHCCCCCCCHHHHCCCEEEEEECCCCEEEEHHHHHHHCCCCCEEEEECCCCCEEEEEECC
GAGITLVSHWAAESFSGPNVVVRPVKEELTSRSAIIFPYPGARLMLAEAFVKDLKEEIRQ
CCCHHHHHHHHHHCCCCCCEEEECHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH
FKQR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]