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The map label for this gene is potC [H]

Identifier: 91790250

GI number: 91790250

Start: 4662996

End: 4663802

Strand: Reverse

Name: potC [H]

Synonym: Bpro_4417

Alternate gene names: 91790250

Gene position: 4663802-4662996 (Counterclockwise)

Preceding gene: 91790251

Following gene: 91790249

Centisome position: 89.68

GC content: 57.37

Gene sequence:

>807_bases
ATGAAAGGCGAGATCGGAAGAAACGGCTGGCTGGCCTTGCTGTATCACGCGTGCTTTGTGATTTTTATCGTCGCGCCGCT
CATCGTGGTGGCGTTGGTCTCGTTCACCGACAAAGACTATATTTCGTTGCCGTTTGATGGCGCGTCGCTGCGGTGGTTTG
AGGCGATTTTGAATACCCCGGACATCATCGACGCATTCTGGTTGTCCGTTTGGTTAGGGCTTGGCTCGGCCACGATTGCT
GCAGCGTTGGCGTTGCCTGGCGCGATCGCCATTGCCCGCCATCGCTTCCGCGGACGCGAGACACTGATGGCATTCCTCAT
GTCGCCGCTAATGATCCCGCACATCGTGATGGGTGTGGCGTTTCTGCGGTTCTTCTCGCTGACCGGCTGGAGTGGCTCAG
TCATCGCCTTGATGCTGACACACGCGGTGATTGTGCTTCCCTATTCACTGCGGTTAACCCTCGCAGCCCTGATCGGTATG
GATCGCGACGCGGAGATGGCTGCGATGTCGCTAGGCGCGTCCCGCCTGACCACATTCAGGCGCGTTCTATTGCCGCTCAT
CATGCCTGGCGTAGCAGGTGGCTGGATGCTGGCTTTCATACAGAGCTTTGACGAAGTCACCATGACGATCTTTGTTGCCA
CACCGGGAACGACCACGCTGCCAGTCGCCATTTACCACCGCATCTCGCAGATCACCGATCCGCTCGTCGCATCAATATCT
ACCGTGCTGATTGTCGGCACCTTGATCCTGATGGTCTTGCTGGACCGGGTGGTTGGACTAGACCGTGTGCTGATCGGCAA
GAAGTAA

Upstream 100 bases:

>100_bases
TGGGGGCGGCTATCGCAGTGCTACTTCTTTTGGCCAATGTCGTCATTATTGTGGGTTGCAACCGCATGCTTGAGCGCCGC
TTTAAACAGGTATTCGCATC

Downstream 100 bases:

>100_bases
CCCTTTCTCTTTAACAGAAACATTAACAGGCCAAGCCTGTGAAGGACGGCGCTCGTCCCGACGAACGCCAAAGCCCCACA
TCGCAGGCAAGGAGAACATC

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKGEIGRNGWLALLYHACFVIFIVAPLIVVALVSFTDKDYISLPFDGASLRWFEAILNTPDIIDAFWLSVWLGLGSATIA
AALALPGAIAIARHRFRGRETLMAFLMSPLMIPHIVMGVAFLRFFSLTGWSGSVIALMLTHAVIVLPYSLRLTLAALIGM
DRDAEMAAMSLGASRLTTFRRVLLPLIMPGVAGGWMLAFIQSFDEVTMTIFVATPGTTTLPVAIYHRISQITDPLVASIS
TVLIVGTLILMVLLDRVVGLDRVLIGKK

Sequences:

>Translated_268_residues
MKGEIGRNGWLALLYHACFVIFIVAPLIVVALVSFTDKDYISLPFDGASLRWFEAILNTPDIIDAFWLSVWLGLGSATIA
AALALPGAIAIARHRFRGRETLMAFLMSPLMIPHIVMGVAFLRFFSLTGWSGSVIALMLTHAVIVLPYSLRLTLAALIGM
DRDAEMAAMSLGASRLTTFRRVLLPLIMPGVAGGWMLAFIQSFDEVTMTIFVATPGTTTLPVAIYHRISQITDPLVASIS
TVLIVGTLILMVLLDRVVGLDRVLIGKK
>Mature_268_residues
MKGEIGRNGWLALLYHACFVIFIVAPLIVVALVSFTDKDYISLPFDGASLRWFEAILNTPDIIDAFWLSVWLGLGSATIA
AALALPGAIAIARHRFRGRETLMAFLMSPLMIPHIVMGVAFLRFFSLTGWSGSVIALMLTHAVIVLPYSLRLTLAALIGM
DRDAEMAAMSLGASRLTTFRRVLLPLIMPGVAGGWMLAFIQSFDEVTMTIFVATPGTTTLPVAIYHRISQITDPLVASIS
TVLIVGTLILMVLLDRVVGLDRVLIGKK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=229, Percent_Identity=31.8777292576419, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787081, Length=230, Percent_Identity=30, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787714, Length=227, Percent_Identity=29.9559471365639, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788764, Length=208, Percent_Identity=25.4807692307692, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29143; Mature: 29143

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGEIGRNGWLALLYHACFVIFIVAPLIVVALVSFTDKDYISLPFDGASLRWFEAILNTP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHCCC
DIIDAFWLSVWLGLGSATIAAALALPGAIAIARHRFRGRETLMAFLMSPLMIPHIVMGVA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FLRFFSLTGWSGSVIALMLTHAVIVLPYSLRLTLAALIGMDRDAEMAAMSLGASRLTTFR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RVLLPLIMPGVAGGWMLAFIQSFDEVTMTIFVATPGTTTLPVAIYHRISQITDPLVASIS
HHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
TVLIVGTLILMVLLDRVVGLDRVLIGKK
HHHHHHHHHHHHHHHHHHCHHHHHCCCC
>Mature Secondary Structure
MKGEIGRNGWLALLYHACFVIFIVAPLIVVALVSFTDKDYISLPFDGASLRWFEAILNTP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHCCC
DIIDAFWLSVWLGLGSATIAAALALPGAIAIARHRFRGRETLMAFLMSPLMIPHIVMGVA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FLRFFSLTGWSGSVIALMLTHAVIVLPYSLRLTLAALIGMDRDAEMAAMSLGASRLTTFR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RVLLPLIMPGVAGGWMLAFIQSFDEVTMTIFVATPGTTTLPVAIYHRISQITDPLVASIS
HHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
TVLIVGTLILMVLLDRVVGLDRVLIGKK
HHHHHHHHHHHHHHHHHHCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]