| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ooxA [H]
Identifier: 91790247
GI number: 91790247
Start: 4660047
End: 4661423
Strand: Reverse
Name: ooxA [H]
Synonym: Bpro_4414
Alternate gene names: 91790247
Gene position: 4661423-4660047 (Counterclockwise)
Preceding gene: 91790248
Following gene: 91790246
Centisome position: 89.64
GC content: 60.49
Gene sequence:
>1377_bases ATGGACGCTAATGTCGTTGATCTTGTCATCGTGGGCGCGGGCCCGGCCGGATTGGCCGCAGCGTGTGAAGCGCGTAGATG GGGGCTGAGCGTGGCCCTGCTGGATGAGCAAATCGCGTCAGGCGGACAGATCTACCGCGCTGTAGACGCTGCCAGCAAAA AAAGAAAGTCGGTGCTCGGTGAAGACTACGCTGCAGGGACCGAGTTGACCCGCGCATTCGCCAAAAGCGGCGCTCAGCAT ATCGCGGGTGCCGCGGTGTGGAATGTTGGCCGCGACCTGAAGGTGAACTATGTTCGCCAAGGCGCCAATCAAGTTCTGCA AGCGCGCAACATTATTCTGGCCAGCGGTGCGATGGAGCGGCCGTTCCCTATACCCGGTTGGACGCTGCCTGGAGTTATGG GCGCGGGTGCAGCGCAGATTTTGTACAAGAGTGCTGGCGCGTTACCGAGCGAGCCGGTCGTGCTGGCAGGATGCGGCCCC TTGCTCTATCTCCTGGCTAGCCAGTATCTGCAGGCAGGGGTGAAACTGAAGGCGGTGGTGCACACCACCCAGCGCGGTGA TTATTTGAGGGCAGTGGCCCACATCGGAGGCGCACTACGCGGATGGCGCGATCTGCGCAAAGGCATGCGCATGCTTAGCC ATCTGCGCCAGCATGGGGTCCCAGTCTATGCAGGTGCGAAAGCCCTTTCGATCCAGGGCACTGACCACGCTGAAGCGATG TGCTTCACCCATAAAGGTCGGTCCCACCGCATCGAATCATCGCTCGTGCTTTTGCATCAAGGGGTGGTGCCTAACACTCA GCTTAGCTGGTCGCTCAGGGCCAAGCACCATTGGAGTGAGGCCCAGTTGTGCTGGGAACCGGAAACAGACGAGTACGGCC AGATCGAAGAAAGCGGCATTTATATCGCAGGCGATAGCCGCGGGATTGTGGGCGCCAAGGCTTCGGCTTCGCAAGGGCGG CTGGCAGCTGTCGCGGTTGCCGGCAGGCTTGGCCATCTTGAAGGGGCCGACCGCGATGATCGCGAAAATGCCGTGCGAAA AGAGTTGCGAAATCAGCTGCACATCAGGCCATTCCTTGATGCACTCTATCGCCCGCCGGAGGTGCAGCGTATCCCGCAGG AAGACTCCGTCATCGTTTGTCGCTGTGAAGAGGTCACTGCGGGCCAGATCAGAAAGTATGTCGAACTCGGCTGCCAGGGC CCCAACCAGACCAAGGCGTTTGGGCGATGTGGGATGGGGCCTTGCCAGGGACGGCTGTGTGGCTTGACTGTTACTGAGCT CATTGCTGATAGCCGTGGCCTGCCTCCGCAGGAAGTGGGGTACTACCGTATTCGGCCTCCCGTCAAGCCAGTGACGATAG GTGAGTTGGCCGGCTAG
Upstream 100 bases:
>100_bases CCCAGCCGCCAAGCCTGTCTGATCCCTGTTCGTGAGGGAATGATTGTCAGACGGCAACAAGGTGCGTCTGCCCTGGAAAT TTCCACGGAAGGAGAAAACC
Downstream 100 bases:
>100_bases CCGTTTAGAAAAGGAGGGCGTCCGACATAGGGGTGCCACCTTGCGAAGCAAGTAGAACCACGCAGTGACCTGCGTGGGAT TTTTTAACTCAAACAAAGGA
Product: BFD-like protein
Products: NA
Alternate protein names: Octopine oxidase subunit A [H]
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLGEDYAAGTELTRAFAKSGAQH IAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMERPFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGP LLYLLASQYLQAGVKLKAVVHTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGIYIAGDSRGIVGAKASASQGR LAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLDALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQG PNQTKAFGRCGMGPCQGRLCGLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG
Sequences:
>Translated_458_residues MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLGEDYAAGTELTRAFAKSGAQH IAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMERPFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGP LLYLLASQYLQAGVKLKAVVHTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGIYIAGDSRGIVGAKASASQGR LAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLDALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQG PNQTKAFGRCGMGPCQGRLCGLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG >Mature_458_residues MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLGEDYAAGTELTRAFAKSGAQH IAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMERPFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGP LLYLLASQYLQAGVKLKAVVHTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGIYIAGDSRGIVGAKASASQGR LAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLDALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQG PNQTKAFGRCGMGPCQGRLCGLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG
Specific function: Oxidative cleavage of octopine into L-arginine and pyruvate [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To T-protein and to dimethylglycine dehydrogenase [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007419 - InterPro: IPR013027 - InterPro: IPR017224 - InterPro: IPR000103 [H]
Pfam domain/function: PF04324 Fer2_BFD; PF07992 Pyr_redox_2 [H]
EC number: NA
Molecular weight: Translated: 49185; Mature: 49185
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLG CCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEEHHHHHCCCCEEEHHHHHHHHHHHHHC EDYAAGTELTRAFAKSGAQHIAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMER CCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCC PFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGPLLYLLASQYLQAGVKLKAVV CCCCCCCCCCCHHCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE HTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCEE CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGI EEECCCCCCCHHHHEEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCEECCCE YIAGDSRGIVGAKASASQGRLAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLD EEECCCCCEEECCCCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH ALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQGPNQTKAFGRCGMGPCQGRLC HHCCCCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEE GLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG CHHHHHHHHCCCCCCHHHCCEEEECCCCCCCCCCCCCC >Mature Secondary Structure MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLG CCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEEHHHHHCCCCEEEHHHHHHHHHHHHHC EDYAAGTELTRAFAKSGAQHIAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMER CCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCC PFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGPLLYLLASQYLQAGVKLKAVV CCCCCCCCCCCHHCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE HTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCEE CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGI EEECCCCCCCHHHHEEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCEECCCE YIAGDSRGIVGAKASASQGRLAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLD EEECCCCCEEECCCCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH ALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQGPNQTKAFGRCGMGPCQGRLC HHCCCCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEE GLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG CHHHHHHHHCCCCCCHHHCCEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA