Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is ooxA [H]

Identifier: 91790247

GI number: 91790247

Start: 4660047

End: 4661423

Strand: Reverse

Name: ooxA [H]

Synonym: Bpro_4414

Alternate gene names: 91790247

Gene position: 4661423-4660047 (Counterclockwise)

Preceding gene: 91790248

Following gene: 91790246

Centisome position: 89.64

GC content: 60.49

Gene sequence:

>1377_bases
ATGGACGCTAATGTCGTTGATCTTGTCATCGTGGGCGCGGGCCCGGCCGGATTGGCCGCAGCGTGTGAAGCGCGTAGATG
GGGGCTGAGCGTGGCCCTGCTGGATGAGCAAATCGCGTCAGGCGGACAGATCTACCGCGCTGTAGACGCTGCCAGCAAAA
AAAGAAAGTCGGTGCTCGGTGAAGACTACGCTGCAGGGACCGAGTTGACCCGCGCATTCGCCAAAAGCGGCGCTCAGCAT
ATCGCGGGTGCCGCGGTGTGGAATGTTGGCCGCGACCTGAAGGTGAACTATGTTCGCCAAGGCGCCAATCAAGTTCTGCA
AGCGCGCAACATTATTCTGGCCAGCGGTGCGATGGAGCGGCCGTTCCCTATACCCGGTTGGACGCTGCCTGGAGTTATGG
GCGCGGGTGCAGCGCAGATTTTGTACAAGAGTGCTGGCGCGTTACCGAGCGAGCCGGTCGTGCTGGCAGGATGCGGCCCC
TTGCTCTATCTCCTGGCTAGCCAGTATCTGCAGGCAGGGGTGAAACTGAAGGCGGTGGTGCACACCACCCAGCGCGGTGA
TTATTTGAGGGCAGTGGCCCACATCGGAGGCGCACTACGCGGATGGCGCGATCTGCGCAAAGGCATGCGCATGCTTAGCC
ATCTGCGCCAGCATGGGGTCCCAGTCTATGCAGGTGCGAAAGCCCTTTCGATCCAGGGCACTGACCACGCTGAAGCGATG
TGCTTCACCCATAAAGGTCGGTCCCACCGCATCGAATCATCGCTCGTGCTTTTGCATCAAGGGGTGGTGCCTAACACTCA
GCTTAGCTGGTCGCTCAGGGCCAAGCACCATTGGAGTGAGGCCCAGTTGTGCTGGGAACCGGAAACAGACGAGTACGGCC
AGATCGAAGAAAGCGGCATTTATATCGCAGGCGATAGCCGCGGGATTGTGGGCGCCAAGGCTTCGGCTTCGCAAGGGCGG
CTGGCAGCTGTCGCGGTTGCCGGCAGGCTTGGCCATCTTGAAGGGGCCGACCGCGATGATCGCGAAAATGCCGTGCGAAA
AGAGTTGCGAAATCAGCTGCACATCAGGCCATTCCTTGATGCACTCTATCGCCCGCCGGAGGTGCAGCGTATCCCGCAGG
AAGACTCCGTCATCGTTTGTCGCTGTGAAGAGGTCACTGCGGGCCAGATCAGAAAGTATGTCGAACTCGGCTGCCAGGGC
CCCAACCAGACCAAGGCGTTTGGGCGATGTGGGATGGGGCCTTGCCAGGGACGGCTGTGTGGCTTGACTGTTACTGAGCT
CATTGCTGATAGCCGTGGCCTGCCTCCGCAGGAAGTGGGGTACTACCGTATTCGGCCTCCCGTCAAGCCAGTGACGATAG
GTGAGTTGGCCGGCTAG

Upstream 100 bases:

>100_bases
CCCAGCCGCCAAGCCTGTCTGATCCCTGTTCGTGAGGGAATGATTGTCAGACGGCAACAAGGTGCGTCTGCCCTGGAAAT
TTCCACGGAAGGAGAAAACC

Downstream 100 bases:

>100_bases
CCGTTTAGAAAAGGAGGGCGTCCGACATAGGGGTGCCACCTTGCGAAGCAAGTAGAACCACGCAGTGACCTGCGTGGGAT
TTTTTAACTCAAACAAAGGA

Product: BFD-like protein

Products: NA

Alternate protein names: Octopine oxidase subunit A [H]

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLGEDYAAGTELTRAFAKSGAQH
IAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMERPFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGP
LLYLLASQYLQAGVKLKAVVHTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM
CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGIYIAGDSRGIVGAKASASQGR
LAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLDALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQG
PNQTKAFGRCGMGPCQGRLCGLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG

Sequences:

>Translated_458_residues
MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLGEDYAAGTELTRAFAKSGAQH
IAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMERPFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGP
LLYLLASQYLQAGVKLKAVVHTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM
CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGIYIAGDSRGIVGAKASASQGR
LAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLDALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQG
PNQTKAFGRCGMGPCQGRLCGLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG
>Mature_458_residues
MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLGEDYAAGTELTRAFAKSGAQH
IAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMERPFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGP
LLYLLASQYLQAGVKLKAVVHTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM
CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGIYIAGDSRGIVGAKASASQGR
LAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLDALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQG
PNQTKAFGRCGMGPCQGRLCGLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG

Specific function: Oxidative cleavage of octopine into L-arginine and pyruvate [H]

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To T-protein and to dimethylglycine dehydrogenase [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007419
- InterPro:   IPR013027
- InterPro:   IPR017224
- InterPro:   IPR000103 [H]

Pfam domain/function: PF04324 Fer2_BFD; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 49185; Mature: 49185

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLG
CCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEEHHHHHCCCCEEEHHHHHHHHHHHHHC
EDYAAGTELTRAFAKSGAQHIAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMER
CCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCC
PFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGPLLYLLASQYLQAGVKLKAVV
CCCCCCCCCCCHHCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE
HTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCEE
CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGI
EEECCCCCCCHHHHEEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCEECCCE
YIAGDSRGIVGAKASASQGRLAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLD
EEECCCCCEEECCCCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
ALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQGPNQTKAFGRCGMGPCQGRLC
HHCCCCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEE
GLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG
CHHHHHHHHCCCCCCHHHCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MDANVVDLVIVGAGPAGLAAACEARRWGLSVALLDEQIASGGQIYRAVDAASKKRKSVLG
CCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEEHHHHHCCCCEEEHHHHHHHHHHHHHC
EDYAAGTELTRAFAKSGAQHIAGAAVWNVGRDLKVNYVRQGANQVLQARNIILASGAMER
CCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCC
PFPIPGWTLPGVMGAGAAQILYKSAGALPSEPVVLAGCGPLLYLLASQYLQAGVKLKAVV
CCCCCCCCCCCHHCCCHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE
HTTQRGDYLRAVAHIGGALRGWRDLRKGMRMLSHLRQHGVPVYAGAKALSIQGTDHAEAM
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCEE
CFTHKGRSHRIESSLVLLHQGVVPNTQLSWSLRAKHHWSEAQLCWEPETDEYGQIEESGI
EEECCCCCCCHHHHEEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCEECCCE
YIAGDSRGIVGAKASASQGRLAAVAVAGRLGHLEGADRDDRENAVRKELRNQLHIRPFLD
EEECCCCCEEECCCCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
ALYRPPEVQRIPQEDSVIVCRCEEVTAGQIRKYVELGCQGPNQTKAFGRCGMGPCQGRLC
HHCCCCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEE
GLTVTELIADSRGLPPQEVGYYRIRPPVKPVTIGELAG
CHHHHHHHHCCCCCCHHHCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA