Click here to switch to the map view.

The map label for this gene is yoaB [C]

Identifier: 91790246

GI number: 91790246

Start: 4659571

End: 4659939

Strand: Reverse

Name: yoaB [C]

Synonym: Bpro_4413

Alternate gene names: 91790246

Gene position: 4659939-4659571 (Counterclockwise)

Preceding gene: 91790247

Following gene: 91790245

Centisome position: 89.61

GC content: 58.27

Gene sequence:

>369_bases
ATGAGCGACATCACACGCATTGCCACCGATCAGCGCCGTAGCCGTACCGTGGTTTACAACGGCATGGTTTTTGTAGGCGG
CATGACGGCCGACGACCGCAGCCAGGATATTCGTGGCCAGACCCGCCAGACCCTGGCAAAGATTGAGAAGTTTCTTGCCG
AGGTCGGCACAGATAAGAGCCGCCTACTCACCGCACAGATCTGGATCAAGGACCTCAAGAACGATTTCGCAGGCATGAAT
GAAGTCTGGGATGCATGGACAGCGCCCGGCGCCGCTTCCACGCGTGCCACTGCCCAGTGCGAGCTGGGTGCACCGGACGT
ACTGGTAGAGATCATCGTAACGGCCGCAGCAGGAAAAGGTTCTGCATAA

Upstream 100 bases:

>100_bases
GAAAAGGAGGGCGTCCGACATAGGGGTGCCACCTTGCGAAGCAAGTAGAACCACGCAGTGACCTGCGTGGGATTTTTTAA
CTCAAACAAAGGAGATTCAG

Downstream 100 bases:

>100_bases
ATGAAGATCGCAGATATCCGTTGGTATGTGGTTCCCACGCCCTTCAAGGACTTCACGATGGTCGTTGTCGAAACAGACGA
CGGCATCACCGGTGTCGGCG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSDITRIATDQRRSRTVVYNGMVFVGGMTADDRSQDIRGQTRQTLAKIEKFLAEVGTDKSRLLTAQIWIKDLKNDFAGMN
EVWDAWTAPGAASTRATAQCELGAPDVLVEIIVTAAAGKGSA

Sequences:

>Translated_122_residues
MSDITRIATDQRRSRTVVYNGMVFVGGMTADDRSQDIRGQTRQTLAKIEKFLAEVGTDKSRLLTAQIWIKDLKNDFAGMN
EVWDAWTAPGAASTRATAQCELGAPDVLVEIIVTAAAGKGSA
>Mature_121_residues
SDITRIATDQRRSRTVVYNGMVFVGGMTADDRSQDIRGQTRQTLAKIEKFLAEVGTDKSRLLTAQIWIKDLKNDFAGMNE
VWDAWTAPGAASTRATAQCELGAPDVLVEIIVTAAAGKGSA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=113, Percent_Identity=40.7079646017699, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13190; Mature: 13059

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDITRIATDQRRSRTVVYNGMVFVGGMTADDRSQDIRGQTRQTLAKIEKFLAEVGTDKS
CCCCHHHHHHHCCCCEEEECCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCHH
RLLTAQIWIKDLKNDFAGMNEVWDAWTAPGAASTRATAQCELGAPDVLVEIIVTAAAGKG
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCC
SA
CC
>Mature Secondary Structure 
SDITRIATDQRRSRTVVYNGMVFVGGMTADDRSQDIRGQTRQTLAKIEKFLAEVGTDKS
CCCHHHHHHHCCCCEEEECCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCHH
RLLTAQIWIKDLKNDFAGMNEVWDAWTAPGAASTRATAQCELGAPDVLVEIIVTAAAGKG
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCC
SA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA