| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is catB [H]
Identifier: 91790237
GI number: 91790237
Start: 4647276
End: 4648457
Strand: Reverse
Name: catB [H]
Synonym: Bpro_4404
Alternate gene names: 91790237
Gene position: 4648457-4647276 (Counterclockwise)
Preceding gene: 91790238
Following gene: 91790236
Centisome position: 89.39
GC content: 60.83
Gene sequence:
>1182_bases ATGACGACCGAAAGAAACAGAATGGCAGAAAGACTCAGTACCGTGGCGATGGCGCCGGTGATCGCAGCAGAGGTGTTCGA AATTGAAGCTGCGTTCGTTACGCCCTACAAGCTGTCCACCGGCACGTTGGCTACAACACGCGCAGTGTTGCTCAAATTGA CCGACGCCGACGGCGTTGAGGGTTGGGGAGAGGCCAATCCCAGCGAGGCCTTTACTGGAGAGTCGTCCGGTGACGCCGCG AGGGCTCTTAAGGACGTGCTGTTGCCGGCGGTGCTCGCTTCTGCTGATCCCCAACCGGGTCGCATTGATGCGGCACTGGA CGCACTGCTGCCCAAGCACCTTTGTGCCAAAGGTGCGGTGAGCATGGCGCTGCTCGATCTCCTCGGAAAACGGCTGCGTG TACCTGTTGCAACGCTACTGGGTGGGACGCTACGCAAATCGCTTCCGGTACTGTGGCCACTCAACAATGGTACCGCCGAG GACGATATCCGCGTGATCGACGAGCGGGCGGCTCAAGGTTTTTCGAGCTTCATGCTAAAGATGGGCACGTCACCGGTGCG TGATGAGGTGCAGCGGGTTGCTACGCTCGAGGCCCGCTACGGGAAACGTGTAGCGCTCATCGCCGACGCCAACCAGGGCT GGAGCCGTGACGAAGCGCGAGAGTTCCTGGACGGGGTCCGAGGCTCTCAACTTGCGTTCGTCGAACAGCCCGTAGTGAAG GACGACCTCGAGGGTATGGCGCTGCTGGCGAGTGGCAGCACGTTGCAGATATCAGCCGACGAGTCGGTGGTTGGACTCGC GCACGCCGCCCGCATCGCTAGTCTCGGGGCCGCCAGTGTCTTCAGCATCAAGAGCAGCAAGAACGGCGGGCCTCTGCGTG CCCAACGCATCGCCGCGGTGGCAGAGGCCTTCGGGATTCGCTGCTACATGAATTCGATGCTGGAGTTCGGTATCACGCAG GCGGCTTCGTTGCAGCACGCCGTGACTATTGGAAACCTTGTTGACTTTGGGCACGCCTACATGTCCACCTTGCGCCTCGC GGAGGATCCCACCGATTTTTCTTCGTTTGTGCGCGATGGGGTAGTGCACTTTCCCGGCACTACCGGCTTGGGTATCCAGG TTGACGAGCCTCACGTTCGCCGCCTGGCAGTGGACAGCTTCATTCTTGGGGCACAACGGTGA
Upstream 100 bases:
>100_bases AGGCGGCATTCTTCCTAATGGCAGCAGTAGTGATTGGTTTGAACTTCATCACCGATCTCTCCTATAGCCTCCTCGACCCA CGCATCCGGCTTGGAACCAC
Downstream 100 bases:
>100_bases ACCGCAAATCTCTCAAGGCCCCCGCCGCGACCCCTGCCGGAGGCCGGGCGCTGCGCTGGGCGGGCGTGCTACGCCGCGAG CTGGCCAACAATTTGCGGGT
Product: mandelate racemase/muconate lactonizing protein
Products: NA
Alternate protein names: Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I [H]
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MTTERNRMAERLSTVAMAPVIAAEVFEIEAAFVTPYKLSTGTLATTRAVLLKLTDADGVEGWGEANPSEAFTGESSGDAA RALKDVLLPAVLASADPQPGRIDAALDALLPKHLCAKGAVSMALLDLLGKRLRVPVATLLGGTLRKSLPVLWPLNNGTAE DDIRVIDERAAQGFSSFMLKMGTSPVRDEVQRVATLEARYGKRVALIADANQGWSRDEAREFLDGVRGSQLAFVEQPVVK DDLEGMALLASGSTLQISADESVVGLAHAARIASLGAASVFSIKSSKNGGPLRAQRIAAVAEAFGIRCYMNSMLEFGITQ AASLQHAVTIGNLVDFGHAYMSTLRLAEDPTDFSSFVRDGVVHFPGTTGLGIQVDEPHVRRLAVDSFILGAQR
Sequences:
>Translated_393_residues MTTERNRMAERLSTVAMAPVIAAEVFEIEAAFVTPYKLSTGTLATTRAVLLKLTDADGVEGWGEANPSEAFTGESSGDAA RALKDVLLPAVLASADPQPGRIDAALDALLPKHLCAKGAVSMALLDLLGKRLRVPVATLLGGTLRKSLPVLWPLNNGTAE DDIRVIDERAAQGFSSFMLKMGTSPVRDEVQRVATLEARYGKRVALIADANQGWSRDEAREFLDGVRGSQLAFVEQPVVK DDLEGMALLASGSTLQISADESVVGLAHAARIASLGAASVFSIKSSKNGGPLRAQRIAAVAEAFGIRCYMNSMLEFGITQ AASLQHAVTIGNLVDFGHAYMSTLRLAEDPTDFSSFVRDGVVHFPGTTGLGIQVDEPHVRRLAVDSFILGAQR >Mature_392_residues TTERNRMAERLSTVAMAPVIAAEVFEIEAAFVTPYKLSTGTLATTRAVLLKLTDADGVEGWGEANPSEAFTGESSGDAAR ALKDVLLPAVLASADPQPGRIDAALDALLPKHLCAKGAVSMALLDLLGKRLRVPVATLLGGTLRKSLPVLWPLNNGTAED DIRVIDERAAQGFSSFMLKMGTSPVRDEVQRVATLEARYGKRVALIADANQGWSRDEAREFLDGVRGSQLAFVEQPVVKD DLEGMALLASGSTLQISADESVVGLAHAARIASLGAASVFSIKSSKNGGPLRAQRIAAVAEAFGIRCYMNSMLEFGITQA ASLQHAVTIGNLVDFGHAYMSTLRLAEDPTDFSSFVRDGVVHFPGTTGLGIQVDEPHVRRLAVDSFILGAQR
Specific function: Catalyzes a syn cycloisomerization [H]
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI48994953, Length=375, Percent_Identity=23.4666666666667, Blast_Score=66, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013370 - InterPro: IPR018110 - InterPro: IPR013342 - InterPro: IPR013341 - InterPro: IPR001354 [H]
Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]
EC number: =5.5.1.1 [H]
Molecular weight: Translated: 41727; Mature: 41596
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: PS00909 MR_MLE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTERNRMAERLSTVAMAPVIAAEVFEIEAAFVTPYKLSTGTLATTRAVLLKLTDADGVE CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEECCCCHHHHEEEEEEECCCCCCC GWGEANPSEAFTGESSGDAARALKDVLLPAVLASADPQPGRIDAALDALLPKHLCAKGAV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH SMALLDLLGKRLRVPVATLLGGTLRKSLPVLWPLNNGTAEDDIRVIDERAAQGFSSFMLK HHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH MGTSPVRDEVQRVATLEARYGKRVALIADANQGWSRDEAREFLDGVRGSQLAFVEQPVVK HCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCHHH DDLEGMALLASGSTLQISADESVVGLAHAARIASLGAASVFSIKSSKNGGPLRAQRIAAV HCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHCCCHHEEEEECCCCCCCHHHHHHHHH AEAFGIRCYMNSMLEFGITQAASLQHAVTIGNLVDFGHAYMSTLRLAEDPTDFSSFVRDG HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC VVHFPGTTGLGIQVDEPHVRRLAVDSFILGAQR CEECCCCCCCCEEECCCHHHHHHHHHHHHCCCC >Mature Secondary Structure TTERNRMAERLSTVAMAPVIAAEVFEIEAAFVTPYKLSTGTLATTRAVLLKLTDADGVE CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEECCCCHHHHEEEEEEECCCCCCC GWGEANPSEAFTGESSGDAARALKDVLLPAVLASADPQPGRIDAALDALLPKHLCAKGAV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH SMALLDLLGKRLRVPVATLLGGTLRKSLPVLWPLNNGTAEDDIRVIDERAAQGFSSFMLK HHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH MGTSPVRDEVQRVATLEARYGKRVALIADANQGWSRDEAREFLDGVRGSQLAFVEQPVVK HCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCHHH DDLEGMALLASGSTLQISADESVVGLAHAARIASLGAASVFSIKSSKNGGPLRAQRIAAV HCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHCCCHHEEEEECCCCCCCHHHHHHHHH AEAFGIRCYMNSMLEFGITQAASLQHAVTIGNLVDFGHAYMSTLRLAEDPTDFSSFVRDG HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC VVHFPGTTGLGIQVDEPHVRRLAVDSFILGAQR CEECCCCCCCCEEECCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8125318 [H]