| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is oppD [C]
Identifier: 91790235
GI number: 91790235
Start: 4645338
End: 4646342
Strand: Reverse
Name: oppD [C]
Synonym: Bpro_4402
Alternate gene names: 91790235
Gene position: 4646342-4645338 (Counterclockwise)
Preceding gene: 91790236
Following gene: 91790234
Centisome position: 89.35
GC content: 60.2
Gene sequence:
>1005_bases ATGTTGCTCGAAGCCCGCAATCTGCGAGTGACTTATCGGAGCGCCCACGGAGATGTGCGCGCCGTCGACGGACTCGATCT GGCAATCAACGAATCTGAAGTCTTTGGTCTGGTCGGCGAGTCCGGTTGCGGAAAATCGACGGTCGTCAAGGCTTTGTTGC GGCTGCTGCCGCCAACCGCCCGGATCGAGGCGGATGTGCTGCGCTTCCGGGAGCACGACTTGCTCACGATGGCGCCGGCA CGCTTTCGGCGCGAGATTCTGATGCGCGAGATCGCGTTGGTGCCGCAGAGCGCGCAGAACTCGCTCAACCCGGTGCAGCG CGTGGGAGCACAGATTGTTGAGGCAATCCGCGCTCACTCGAAAGCGTCCGCGGGCAAGGCCCGCGAACGTGTCGCCGAAC TTTTCGACATCGTCGGCCTTCAGTCGGAGCTGATGGACCGGTTCCCACACCAGTTCTCGGGCGGCATGCGCCAACGCGCG ATGATCGCGATGGCCTTAGCCTTCGAGCCCGCGCTGCTGGTGATGGACGAGCCGACCACTGGTTTGGATGTGCTGGTTCA GGAAAGGCTTCTGGGCCGCATCCGGGAAATCCGCCAACGGATCAAGTCGTCGATTCTGCTGATCACGCACGACATCGGAG TGATTGCTGAAACGGCAGATCGGGTCGGTGTAATGTATTCCGGACGAATGGTCGAAAGTGCGCCGACTACGGCGCTGTTC GCTGCTTCTCAGCATCCATACACCCTTGGCCTCAAGAATGCGTTCCCCAGCATTCTTGAATTGGGGCGCGAGCTAATTTC CATACCCGGGTCGCCACCAGACTTGTCGGACCCTCCCAAAGGATGTGGCTTTGGCGAGCGGTGTCCGTTCGCGCTTGAGA CTTGTCATGCGCGGCGGCCAGCCCTCATCAAAGTCGGACCCGATCACATTTCAGCCTGCATACGTACGGCTGATATCGAA TATATGCGCGCCGCCGCAGCGAAGAAGTTGACATGGCACTCTTAA
Upstream 100 bases:
>100_bases ATCGCGCCATCGGGAGCGATCGTGTTGCTCGTCAGCGCCTTCGTGTTCGTGAGCCGCGCTTACGAAGTTGTCGCTAACCC ACGATTGGGGGACCGCTAAC
Downstream 100 bases:
>100_bases GCGTAGAACACCTAACAAAGCACTTCAGTCTCGGACGCGATCTCGGCGCCGTGCTGCGTCGGCAACCGTCCAACTGGATT AAACCGGTCGAAGACGTGAG
Product: oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTARIEADVLRFREHDLLTMAPA RFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHSKASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRA MIAMALAFEPALLVMDEPTTGLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRPALIKVGPDHISACIRTADIE YMRAAAAKKLTWHS
Sequences:
>Translated_334_residues MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTARIEADVLRFREHDLLTMAPA RFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHSKASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRA MIAMALAFEPALLVMDEPTTGLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRPALIKVGPDHISACIRTADIE YMRAAAAKKLTWHS >Mature_334_residues MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTARIEADVLRFREHDLLTMAPA RFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHSKASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRA MIAMALAFEPALLVMDEPTTGLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRPALIKVGPDHISACIRTADIE YMRAAAAKKLTWHS
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=195, Percent_Identity=32.3076923076923, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI6005701, Length=210, Percent_Identity=27.6190476190476, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI171184400, Length=245, Percent_Identity=30.2040816326531, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27436953, Length=212, Percent_Identity=24.0566037735849, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI48994883, Length=326, Percent_Identity=39.5705521472393, Blast_Score=239, Evalue=2e-64, Organism=Escherichia coli, GI1789963, Length=314, Percent_Identity=39.171974522293, Blast_Score=230, Evalue=1e-61, Organism=Escherichia coli, GI1787548, Length=322, Percent_Identity=35.4037267080745, Blast_Score=199, Evalue=1e-52, Organism=Escherichia coli, GI1787759, Length=319, Percent_Identity=36.0501567398119, Blast_Score=199, Evalue=3e-52, Organism=Escherichia coli, GI1787500, Length=315, Percent_Identity=36.5079365079365, Blast_Score=187, Evalue=1e-48, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=40.1515151515151, Blast_Score=182, Evalue=2e-47, Organism=Escherichia coli, GI1789962, Length=322, Percent_Identity=34.7826086956522, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI1787758, Length=291, Percent_Identity=35.0515463917526, Blast_Score=169, Evalue=2e-43, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=39.2307692307692, Blast_Score=164, Evalue=6e-42, Organism=Escherichia coli, GI48994997, Length=248, Percent_Identity=35.0806451612903, Blast_Score=126, Evalue=3e-30, Organism=Escherichia coli, GI1789890, Length=249, Percent_Identity=35.7429718875502, Blast_Score=118, Evalue=7e-28, Organism=Escherichia coli, GI87081791, Length=265, Percent_Identity=32.4528301886792, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1787547, Length=255, Percent_Identity=29.0196078431373, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=29.7297297297297, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1787712, Length=247, Percent_Identity=29.5546558704453, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=31.4159292035398, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786398, Length=247, Percent_Identity=27.9352226720648, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1788225, Length=247, Percent_Identity=30.7692307692308, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1789032, Length=223, Percent_Identity=30.4932735426009, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790162, Length=249, Percent_Identity=28.1124497991968, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786319, Length=249, Percent_Identity=27.710843373494, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI87081709, Length=264, Percent_Identity=28.4090909090909, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=29.0748898678414, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=30, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790467, Length=229, Percent_Identity=28.3842794759825, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786345, Length=213, Percent_Identity=31.924882629108, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787089, Length=241, Percent_Identity=30.2904564315353, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786872, Length=205, Percent_Identity=31.219512195122, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=32.4074074074074, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI48994943, Length=236, Percent_Identity=28.8135593220339, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87082267, Length=222, Percent_Identity=29.2792792792793, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=28.3185840707965, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789672, Length=255, Percent_Identity=27.843137254902, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=26.6949152542373, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=28.0334728033473, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=29.4605809128631, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787029, Length=242, Percent_Identity=27.6859504132231, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788644, Length=127, Percent_Identity=32.2834645669291, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786253, Length=238, Percent_Identity=27.3109243697479, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1786563, Length=229, Percent_Identity=26.2008733624454, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787112, Length=254, Percent_Identity=27.1653543307087, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87081834, Length=233, Percent_Identity=26.6094420600858, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787792, Length=235, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=28.7081339712919, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789751, Length=238, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI87082268, Length=232, Percent_Identity=28.0172413793103, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789864, Length=226, Percent_Identity=26.9911504424779, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789593, Length=241, Percent_Identity=26.1410788381743, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1790534, Length=204, Percent_Identity=31.3725490196078, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1789991, Length=221, Percent_Identity=22.6244343891403, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17541710, Length=257, Percent_Identity=31.5175097276265, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI193208177, Length=247, Percent_Identity=27.9352226720648, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI25146777, Length=287, Percent_Identity=26.1324041811847, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193209708, Length=241, Percent_Identity=26.9709543568465, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17558664, Length=219, Percent_Identity=29.6803652968037, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71992290, Length=240, Percent_Identity=29.5833333333333, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17567269, Length=236, Percent_Identity=28.3898305084746, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569145, Length=186, Percent_Identity=29.5698924731183, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322980, Length=275, Percent_Identity=26.9090909090909, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6321752, Length=246, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6323959, Length=233, Percent_Identity=26.6094420600858, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI17136662, Length=219, Percent_Identity=32.4200913242009, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24659289, Length=256, Percent_Identity=27.734375, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI281361582, Length=255, Percent_Identity=28.2352941176471, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641342, Length=218, Percent_Identity=29.3577981651376, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI221460257, Length=235, Percent_Identity=30.6382978723404, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574150, Length=219, Percent_Identity=23.2876712328767, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007328, Length=219, Percent_Identity=23.2876712328767, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574259, Length=252, Percent_Identity=29.3650793650794, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI161077321, Length=237, Percent_Identity=29.535864978903, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI45552437, Length=277, Percent_Identity=27.4368231046931, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24643674, Length=258, Percent_Identity=24.4186046511628, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24585557, Length=273, Percent_Identity=27.8388278388278, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36641; Mature: 36641
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTA CCCCCCCCEEEEECCCCCEEEECCCEEEECCCHHEEEECCCCCCHHHHHHHHHHHCCCCH RIEADVLRFREHDLLTMAPARFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHS HHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHH KASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRAMIAMALAFEPALLVMDEPTT HCCCHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCEEEEEECCCC GLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF HHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHCEEECCEEECCCCCCEEE AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRP ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC ALIKVGPDHISACIRTADIEYMRAAAAKKLTWHS EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLLEARNLRVTYRSAHGDVRAVDGLDLAINESEVFGLVGESGCGKSTVVKALLRLLPPTA CCCCCCCCEEEEECCCCCEEEECCCEEEECCCHHEEEECCCCCCHHHHHHHHHHHCCCCH RIEADVLRFREHDLLTMAPARFRREILMREIALVPQSAQNSLNPVQRVGAQIVEAIRAHS HHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHH KASAGKARERVAELFDIVGLQSELMDRFPHQFSGGMRQRAMIAMALAFEPALLVMDEPTT HCCCHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCEEEEEECCCC GLDVLVQERLLGRIREIRQRIKSSILLITHDIGVIAETADRVGVMYSGRMVESAPTTALF HHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHCEEECCEEECCCCCCEEE AASQHPYTLGLKNAFPSILELGRELISIPGSPPDLSDPPKGCGFGERCPFALETCHARRP ECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC ALIKVGPDHISACIRTADIEYMRAAAAKKLTWHS EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]