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The map label for this gene is yoaB [H]

Identifier: 91790230

GI number: 91790230

Start: 4641176

End: 4641538

Strand: Reverse

Name: yoaB [H]

Synonym: Bpro_4397

Alternate gene names: 91790230

Gene position: 4641538-4641176 (Counterclockwise)

Preceding gene: 91790231

Following gene: 91790228

Centisome position: 89.26

GC content: 57.3

Gene sequence:

>363_bases
ATGAGCACTATCGAACGCAAGCACACCAACGCACGCATGAGCAAGATCGTGCAGCATGGCGGCTTGGTCTACCTATGCGG
TCAGACCGCCACTAGCAGCGCCAATGCCAACGCTGACATCACCGCTCAGATGCATGAAACCTTGTCGCGTGTCGACGCGC
TGTTAACCGAGGCGGGCAGTAACCGCGAGCAGATCCTTTCAGCGACCATCTATTTGAAGAACATAGACGACTTCGCCGCG
ATGAATGCAGTCTGGGAATCGTGGATTGTCTCCCGCACCGCACCGGCGAGAACTACGGTAGAGGCGCGACTCGCAGCGGC
AAACCTCTTGGTTGAGGTGACCGTCATTGCCTCGTTGGGTTGA

Upstream 100 bases:

>100_bases
CCTATCACATTCGGTCGCCGCTGAAGCCGGTGCCGCTGGCATCTATTGCTGCACTGGCCGACACGGCAACCATCGAAAAC
TCTGAACCCATGGAAACAAC

Downstream 100 bases:

>100_bases
GTCGGAGTTCCAAGTTATTCGCCATCGACGAGTATCTGGCTGGAAGGCCACATTGCGGCGAAGGTCATCGTCGAGGCTGC
GCGGCGCCAGGGCAAGTACC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MSTIERKHTNARMSKIVQHGGLVYLCGQTATSSANANADITAQMHETLSRVDALLTEAGSNREQILSATIYLKNIDDFAA
MNAVWESWIVSRTAPARTTVEARLAAANLLVEVTVIASLG

Sequences:

>Translated_120_residues
MSTIERKHTNARMSKIVQHGGLVYLCGQTATSSANANADITAQMHETLSRVDALLTEAGSNREQILSATIYLKNIDDFAA
MNAVWESWIVSRTAPARTTVEARLAAANLLVEVTVIASLG
>Mature_119_residues
STIERKHTNARMSKIVQHGGLVYLCGQTATSSANANADITAQMHETLSRVDALLTEAGSNREQILSATIYLKNIDDFAAM
NAVWESWIVSRTAPARTTVEARLAAANLLVEVTVIASLG

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=117, Percent_Identity=40.1709401709402, Blast_Score=89, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12916; Mature: 12785

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIERKHTNARMSKIVQHGGLVYLCGQTATSSANANADITAQMHETLSRVDALLTEAGS
CCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
NREQILSATIYLKNIDDFAAMNAVWESWIVSRTAPARTTVEARLAAANLLVEVTVIASLG
CHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEECC
>Mature Secondary Structure 
STIERKHTNARMSKIVQHGGLVYLCGQTATSSANANADITAQMHETLSRVDALLTEAGS
CCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
NREQILSATIYLKNIDDFAAMNAVWESWIVSRTAPARTTVEARLAAANLLVEVTVIASLG
CHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]