| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gsiC [H]
Identifier: 91790228
GI number: 91790228
Start: 4638792
End: 4639781
Strand: Reverse
Name: gsiC [H]
Synonym: Bpro_4394
Alternate gene names: 91790228
Gene position: 4639781-4638792 (Counterclockwise)
Preceding gene: 91790230
Following gene: 91790227
Centisome position: 89.22
GC content: 60.51
Gene sequence:
>990_bases GTGTCATCATTCGGTCACGGAATCGGGCCTGCATGGTGCAGATCCAGCCGCTGTAAATCCAGAGCCGCTGCTCTCCGAAA ACACCTCATGCTCAATTATGTGATCAGACGCCTGTTGCTGTTCGTGCCCATGCTCGCCGGCATCTCACTGGCCGTCTTCC TCGTCATGCATGCCATACCCGGTGACCTGGCGCGCATGGCCGCCGGCCCCGATGCAGCCGAGGCCGACATCGAGCAAATC CGCCGCAACTATGGCCTGGACAAGCCGCTGCACCAGCAGTACTTCATCTACCTCCAGCGTGTGGTCTTGCAAGGCGATCT CGGGGACTCCTTTCAGACCTATGCGCCGGTGACCGAAAGCATCGCACGCACGCTTCCAGCGACCCTTGAGCTGGCCACTG CCGGGATGCTGCTGGCCGTAGTACTTGGTGTACCACTGGGCATCGCGGCTGCACTCAAGCCGCGCGGTCTGCTCGACAGC GCTTTGACCGCACTTGCGGTGGTCGGCATCTCGATGCCGGGGTTCTTCCTGGGCCTTCTGCTGATGCTTGTCTTTGCATC CACGCTGGGCTGGTTGCCTCCCACCGGCCGTGGTAGCTGGCAGCAACTGGTGATGCCAGCCATCACGCTTGGTTTACCGT ATGTAGCTACTTTCTCTCGGTTGGCGCGCTCCAGCATGCTAGACGTGCTGGGGGAGGATTACATCCGCACCGCTTATGCC AAGGGGGTGGCACGGCCACGCGTCGTGTTACGTCATGCCCTGTCCAATGCATCAATACCCCTGGTGACCTCGTTCGGCAT GGACTTTGGCCGCCTGCTTGGGGGGGGCGGTCATCGTCGAGACTGTATTCGCCTGGCCTGGTATGGGTCGTTACATGATC GACGCGATCATGGTCCGCGACATCTACGTCGTGCAGGGAACCATCCTGGTCTTCGCCGCACTCGTCGTTCTCATCAACCT CATCGTCGACCTGGCATATGGATTCCTTGA
Upstream 100 bases:
>100_bases AACGCGCCAATGCAGCGTTAGCCGCAGTTTATTAGCGCAGAGCATAACATTTGCTTATGTGCGTCCAACCCTATTTGGAG TTGTGCCGTGAGGGGGCTGA
Downstream 100 bases:
>100_bases CCCTCGCATCACCTACGCTTGAAGTGCAGCCCAACGTGCCTGTCACCACTGCTGCAACGACTCGGCGTCCGGCCGGCGGC TTCCTGCGTTACCTGCTCAG
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MSSFGHGIGPAWCRSSRCKSRAAALRKHLMLNYVIRRLLLFVPMLAGISLAVFLVMHAIPGDLARMAAGPDAAEADIEQI RRNYGLDKPLHQQYFIYLQRVVLQGDLGDSFQTYAPVTESIARTLPATLELATAGMLLAVVLGVPLGIAAALKPRGLLDS ALTALAVVGISMPGFFLGLLLMLVFASTLGWLPPTGRGSWQQLVMPAITLGLPYVATFSRLARSSMLDVLGEDYIRTAYA KGVARPRVVLRHALSNASIPLVTSFGMDFGRLLGGGGHRRDCIRLAWYGSLHDRRDHGPRHLRRAGNHPGLRRTRRSHQP HRRPGIWIP
Sequences:
>Translated_329_residues MSSFGHGIGPAWCRSSRCKSRAAALRKHLMLNYVIRRLLLFVPMLAGISLAVFLVMHAIPGDLARMAAGPDAAEADIEQI RRNYGLDKPLHQQYFIYLQRVVLQGDLGDSFQTYAPVTESIARTLPATLELATAGMLLAVVLGVPLGIAAALKPRGLLDS ALTALAVVGISMPGFFLGLLLMLVFASTLGWLPPTGRGSWQQLVMPAITLGLPYVATFSRLARSSMLDVLGEDYIRTAYA KGVARPRVVLRHALSNASIPLVTSFGMDFGRLLGGGGHRRDCIRLAWYGSLHDRRDHGPRHLRRAGNHPGLRRTRRSHQP HRRPGIWIP >Mature_328_residues SSFGHGIGPAWCRSSRCKSRAAALRKHLMLNYVIRRLLLFVPMLAGISLAVFLVMHAIPGDLARMAAGPDAAEADIEQIR RNYGLDKPLHQQYFIYLQRVVLQGDLGDSFQTYAPVTESIARTLPATLELATAGMLLAVVLGVPLGIAAALKPRGLLDSA LTALAVVGISMPGFFLGLLLMLVFASTLGWLPPTGRGSWQQLVMPAITLGLPYVATFSRLARSSMLDVLGEDYIRTAYAK GVARPRVVLRHALSNASIPLVTSFGMDFGRLLGGGGHRRDCIRLAWYGSLHDRRDHGPRHLRRAGNHPGLRRTRRSHQPH RRPGIWIP
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787053, Length=247, Percent_Identity=47.7732793522267, Blast_Score=215, Evalue=4e-57, Organism=Escherichia coli, GI1789888, Length=250, Percent_Identity=40.4, Blast_Score=170, Evalue=9e-44, Organism=Escherichia coli, GI1789965, Length=278, Percent_Identity=38.1294964028777, Blast_Score=170, Evalue=1e-43, Organism=Escherichia coli, GI1787761, Length=269, Percent_Identity=38.6617100371747, Blast_Score=147, Evalue=7e-37, Organism=Escherichia coli, GI1787497, Length=251, Percent_Identity=35.8565737051793, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1787550, Length=203, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788504, Length=292, Percent_Identity=27.0547945205479, Blast_Score=92, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 36013; Mature: 35882
Theoretical pI: Translated: 11.62; Mature: 11.62
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSFGHGIGPAWCRSSRCKSRAAALRKHLMLNYVIRRLLLFVPMLAGISLAVFLVMHAIP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GDLARMAAGPDAAEADIEQIRRNYGLDKPLHQQYFIYLQRVVLQGDLGDSFQTYAPVTES HHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH IARTLPATLELATAGMLLAVVLGVPLGIAAALKPRGLLDSALTALAVVGISMPGFFLGLL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH LMLVFASTLGWLPPTGRGSWQQLVMPAITLGLPYVATFSRLARSSMLDVLGEDYIRTAYA HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGVARPRVVLRHALSNASIPLVTSFGMDFGRLLGGGGHRRDCIRLAWYGSLHDRRDHGPR HHCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCHH HLRRAGNHPGLRRTRRSHQPHRRPGIWIP HHHHCCCCCCHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SSFGHGIGPAWCRSSRCKSRAAALRKHLMLNYVIRRLLLFVPMLAGISLAVFLVMHAIP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GDLARMAAGPDAAEADIEQIRRNYGLDKPLHQQYFIYLQRVVLQGDLGDSFQTYAPVTES HHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH IARTLPATLELATAGMLLAVVLGVPLGIAAALKPRGLLDSALTALAVVGISMPGFFLGLL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH LMLVFASTLGWLPPTGRGSWQQLVMPAITLGLPYVATFSRLARSSMLDVLGEDYIRTAYA HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGVARPRVVLRHALSNASIPLVTSFGMDFGRLLGGGGHRRDCIRLAWYGSLHDRRDHGPR HHCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCHH HLRRAGNHPGLRRTRRSHQPHRRPGIWIP HHHHCCCCCCHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA