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The map label for this gene is nocR [H]

Identifier: 91790229

GI number: 91790229

Start: 4639931

End: 4640836

Strand: Direct

Name: nocR [H]

Synonym: Bpro_4395

Alternate gene names: 91790229

Gene position: 4639931-4640836 (Clockwise)

Preceding gene: 91790221

Following gene: 91790241

Centisome position: 89.22

GC content: 58.83

Gene sequence:

>906_bases
ATGGAACTCAATCCCCGACAACTCGAAGCTTTCCGCAATGTCATGATGACCGGCAGCATGACCATTGCCGCGGAGCTTCT
GAAAGTCAGCCAGCCTGCAGTGAGTCGGCTGATAAAGGATTTGGAAAAGACACTTGCCATACGGCTCTTTCGCCGTGAAG
GCAATCGCCTCATCCCAGGCGCGGAGGCACAGCGGCTCTTTCTGGAAGTGGATCGTTTCTATCAAGGTATGGAGCAGGTC
CAGCGAGTCGCGCAGGATCTGAAATCTGTGCGCATCGGCACACTGCGTATCGCCTCCATGCACACGCTGGGGTTGAGCCT
CCTCAGTGAGGGAGTTCGGCGATTTTCACTTGCCCGACCTGGCGTGGTCATTTCGCTGGACGTGCGTAATTCGCTTGGAA
TCCTTGAGCTCACGGCCGCCCATCAGATTGACATCGGATTCGTTCAGATGATGGGTACCGAATACCCAGGGGTCGACGTA
TTCCCGCTTCCGAGCGTCCCTGCAGTCTGCGTGCTTCCACGCGGCCATGCGCTGGCGCGCAAGAAGGCAGTACAAATCAC
TGACCTGCAGGGTGAATCGCTTATCTCGTTGAGCCGCAACAGCCCGATGCGTATGCGACTGGAAATGGCGCTTGAGGCCG
CTGGGGTGACATGCCGACGTTCGGTGGACACAACGCTCGCGCACCTGGCCTGCAGCATGGTCGCTGGTGGGCTGGGTCTC
ACGGTGGTCGACCCATTTACCGCTGGCCGCATGCGCGCTCCCTCGGTTGTCTACCGTCCCCTTTTGCCGACCGTTCCGTG
TGAGTTCTCCATGGTGCTGCCCGCACATCAGCCGCGCTCCAAGGTGGTGGACGATTTCATCCGGGTGATGAAGGAACTGT
TTGACGCTGGCTTTACCTCGGCCTGA

Upstream 100 bases:

>100_bases
AATGTTATGCTCTGCGCTAATAAACTGCGGCTAACGCTGCATTGGCGCGTTGCGCCATCCAGCGGCAGGGACATCGCACG
TCGCTTGTCTTGGAGCAACC

Downstream 100 bases:

>100_bases
GTCGCGGCCAGCCGGTTCGCTCTGTGCGGCTCTTTGGCAAATCGCCCATTCTGCTTGACGATTCCCGCGTCGGGCATGGA
CTTGCCTGGCTCATTGACGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MELNPRQLEAFRNVMMTGSMTIAAELLKVSQPAVSRLIKDLEKTLAIRLFRREGNRLIPGAEAQRLFLEVDRFYQGMEQV
QRVAQDLKSVRIGTLRIASMHTLGLSLLSEGVRRFSLARPGVVISLDVRNSLGILELTAAHQIDIGFVQMMGTEYPGVDV
FPLPSVPAVCVLPRGHALARKKAVQITDLQGESLISLSRNSPMRMRLEMALEAAGVTCRRSVDTTLAHLACSMVAGGLGL
TVVDPFTAGRMRAPSVVYRPLLPTVPCEFSMVLPAHQPRSKVVDDFIRVMKELFDAGFTSA

Sequences:

>Translated_301_residues
MELNPRQLEAFRNVMMTGSMTIAAELLKVSQPAVSRLIKDLEKTLAIRLFRREGNRLIPGAEAQRLFLEVDRFYQGMEQV
QRVAQDLKSVRIGTLRIASMHTLGLSLLSEGVRRFSLARPGVVISLDVRNSLGILELTAAHQIDIGFVQMMGTEYPGVDV
FPLPSVPAVCVLPRGHALARKKAVQITDLQGESLISLSRNSPMRMRLEMALEAAGVTCRRSVDTTLAHLACSMVAGGLGL
TVVDPFTAGRMRAPSVVYRPLLPTVPCEFSMVLPAHQPRSKVVDDFIRVMKELFDAGFTSA
>Mature_301_residues
MELNPRQLEAFRNVMMTGSMTIAAELLKVSQPAVSRLIKDLEKTLAIRLFRREGNRLIPGAEAQRLFLEVDRFYQGMEQV
QRVAQDLKSVRIGTLRIASMHTLGLSLLSEGVRRFSLARPGVVISLDVRNSLGILELTAAHQIDIGFVQMMGTEYPGVDV
FPLPSVPAVCVLPRGHALARKKAVQITDLQGESLISLSRNSPMRMRLEMALEAAGVTCRRSVDTTLAHLACSMVAGGLGL
TVVDPFTAGRMRAPSVVYRPLLPTVPCEFSMVLPAHQPRSKVVDDFIRVMKELFDAGFTSA

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=284, Percent_Identity=36.6197183098592, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI145693105, Length=260, Percent_Identity=23.8461538461538, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=213, Percent_Identity=28.169014084507, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788481, Length=149, Percent_Identity=32.8859060402685, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=25.5144032921811, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=25.9259259259259, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33096; Mature: 33096

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNPRQLEAFRNVMMTGSMTIAAELLKVSQPAVSRLIKDLEKTLAIRLFRREGNRLIPG
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEAQRLFLEVDRFYQGMEQVQRVAQDLKSVRIGTLRIASMHTLGLSLLSEGVRRFSLARP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCC
GVVISLDVRNSLGILELTAAHQIDIGFVQMMGTEYPGVDVFPLPSVPAVCVLPRGHALAR
CEEEEEECCCCCCEEEEECHHCCCHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCHHHH
KKAVQITDLQGESLISLSRNSPMRMRLEMALEAAGVTCRRSVDTTLAHLACSMVAGGLGL
HHCEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
TVVDPFTAGRMRAPSVVYRPLLPTVPCEFSMVLPAHQPRSKVVDDFIRVMKELFDAGFTS
EEECCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
A
C
>Mature Secondary Structure
MELNPRQLEAFRNVMMTGSMTIAAELLKVSQPAVSRLIKDLEKTLAIRLFRREGNRLIPG
CCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEAQRLFLEVDRFYQGMEQVQRVAQDLKSVRIGTLRIASMHTLGLSLLSEGVRRFSLARP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCC
GVVISLDVRNSLGILELTAAHQIDIGFVQMMGTEYPGVDVFPLPSVPAVCVLPRGHALAR
CEEEEEECCCCCCEEEEECHHCCCHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCHHHH
KKAVQITDLQGESLISLSRNSPMRMRLEMALEAAGVTCRRSVDTTLAHLACSMVAGGLGL
HHCEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCE
TVVDPFTAGRMRAPSVVYRPLLPTVPCEFSMVLPAHQPRSKVVDDFIRVMKELFDAGFTS
EEECCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]