| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gsiB [H]
Identifier: 91790226
GI number: 91790226
Start: 4636214
End: 4637779
Strand: Reverse
Name: gsiB [H]
Synonym: Bpro_4392
Alternate gene names: 91790226
Gene position: 4637779-4636214 (Counterclockwise)
Preceding gene: 91790227
Following gene: 91790225
Centisome position: 89.18
GC content: 60.73
Gene sequence:
>1566_bases ATGCGCCATAGTTTTCCGTCCGTCACCCGTCCGCTCACCGCCGCGGGCCTTGCCCTGATGCTGCTCGGCGGTGCCGGCCA TGCTGCAGCCGAGACCAGCTTGACCTATGTCCAAGGCACAGAGATCGACACACTCGATCCAGCCGTGAGCCGTAGCACCC CCTCGCAAATCGTCATCACGCATATTTTTAACAAATTGGTGAGCTGGGACGGTCCTGGCTTCAAGAAGATCGTTCCTGAC CTTGCGGAGTCATGGAACGTCTCTGCTGACGGGAAGGTCTGGACTTTCAATCTTCGCAAAGGAGTGAAATTCCATGATGG GACGCCACTGGACGCGGCGGCTGTCAAGTTCAACCTGGACCGTTTGCGCAGTCCCGAACTGGGTTCGCCGAACCGGTCCT ACTACGCTGCTATTGAGACGGTAGAGGCCCCGAGCACGTACGTCGTGACCATTGCCGCCAAGGAACCGTCGCCCACACTG CTTGAGATTCTGACCGAGGAATGGGCGTCCATCAGCAGCCCCACAGCCATCGAAAAGCGTGGTCGCGCCTATGGCCGCAA CCCCGTGGGTACCGGACCCTATGTATTCAAGAGCTGGATTCCCAATGAGCGCGCCGAGATTGTGCGCAACCCTGACTACT TCGGCACTCCCGGGAAAACAGACCGACTGGTGTTTCGCCCCGTGCCGGAGAATGCTGCGCGCGTGATCGAGCTGAAGACC GGAAACGCGGACGTTGCCGCGAACATTGCGCCGGAACTCACCGGTGACTTCAAGGGCAGCGACAAAATGGTGCTGCAACA AGCCCCTAGTGCCTTTCAGGTGTTCTTCGAGCTGAACGTCACCAAGCCCCCCTTTGACGACGTGCGCGTACGCAAGGCGG TGAATGTGGCCATAGACCGCCAAGCCATCGTCGACAAGATCCTGCTGGGCTATGGCCGCGTTCCCGTCAGCCCCTTTCCA GAGGGAACGCAGGCTCGCCGCATATTTCCGGCTTACAAATACAACCCGGACGAGGCGCGCCGCCTGCTGAAGGCCGCATT CCCTGGTGGGTACCCCGGTGTCGTGACCATGTGGACTCCCTCGGGCCGTTACACAAAGGATCGTGCCGCCGCCGAAGCCG TACAGGGCTACCTCAACGCCGTCGGTCTGAAGACGGAGTTCAAGGTCTGGGAGTGGGCCTCCTACCAGAAGGAGCTGTAC CGCGCCGAGCCCGGCAAGGGTACGGGCAAGGGAAGCAACGGCGCCAACATGTGGCTGCTGGGCACCGGCATCCCGAATGC GGATATCCGCCTGCGCCGCAAGCTGAGCACGGGCGACCCGTCCAACCTCACCGGCTACTCCAACCCGATGGTCGACGGCC TGCTGGCCAAAGCTGCCGGCGAGATGAACTACGACAAACGCATGGCGACGTACGGCGACGTCCAGCGTGTCGTCTGGGAG CTCGAACCCAACACGATACCGCTATTTGACCAGGTTCAACTCATCGGCCAACGCAAGGGCGTCAAGGGTCTGACCGTCTA TAGCGACGAGATCGTCGAATTTAACAACGCAACCGTCACCCGCTAA
Upstream 100 bases:
>100_bases GGCGCTGAAACCCCGTCAGATTAATCCTCCACGCTCCAAGACCTCCATCCGATTCCAATCCTGCATCCGTCATTGCCTTC CAAACTCCGGAGTACCCTCC
Downstream 100 bases:
>100_bases CCCACTTGATGCCAACTTTCAAAGTCCCGATGACATCCACTACCCTTCATGAAACTCTGCTGACCGAAGCCCGGTTGAGC GCTCCCCCGGCCGCACGGCT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 521; Mature: 521
Protein sequence:
>521_residues MRHSFPSVTRPLTAAGLALMLLGGAGHAAAETSLTYVQGTEIDTLDPAVSRSTPSQIVITHIFNKLVSWDGPGFKKIVPD LAESWNVSADGKVWTFNLRKGVKFHDGTPLDAAAVKFNLDRLRSPELGSPNRSYYAAIETVEAPSTYVVTIAAKEPSPTL LEILTEEWASISSPTAIEKRGRAYGRNPVGTGPYVFKSWIPNERAEIVRNPDYFGTPGKTDRLVFRPVPENAARVIELKT GNADVAANIAPELTGDFKGSDKMVLQQAPSAFQVFFELNVTKPPFDDVRVRKAVNVAIDRQAIVDKILLGYGRVPVSPFP EGTQARRIFPAYKYNPDEARRLLKAAFPGGYPGVVTMWTPSGRYTKDRAAAEAVQGYLNAVGLKTEFKVWEWASYQKELY RAEPGKGTGKGSNGANMWLLGTGIPNADIRLRRKLSTGDPSNLTGYSNPMVDGLLAKAAGEMNYDKRMATYGDVQRVVWE LEPNTIPLFDQVQLIGQRKGVKGLTVYSDEIVEFNNATVTR
Sequences:
>Translated_521_residues MRHSFPSVTRPLTAAGLALMLLGGAGHAAAETSLTYVQGTEIDTLDPAVSRSTPSQIVITHIFNKLVSWDGPGFKKIVPD LAESWNVSADGKVWTFNLRKGVKFHDGTPLDAAAVKFNLDRLRSPELGSPNRSYYAAIETVEAPSTYVVTIAAKEPSPTL LEILTEEWASISSPTAIEKRGRAYGRNPVGTGPYVFKSWIPNERAEIVRNPDYFGTPGKTDRLVFRPVPENAARVIELKT GNADVAANIAPELTGDFKGSDKMVLQQAPSAFQVFFELNVTKPPFDDVRVRKAVNVAIDRQAIVDKILLGYGRVPVSPFP EGTQARRIFPAYKYNPDEARRLLKAAFPGGYPGVVTMWTPSGRYTKDRAAAEAVQGYLNAVGLKTEFKVWEWASYQKELY RAEPGKGTGKGSNGANMWLLGTGIPNADIRLRRKLSTGDPSNLTGYSNPMVDGLLAKAAGEMNYDKRMATYGDVQRVVWE LEPNTIPLFDQVQLIGQRKGVKGLTVYSDEIVEFNNATVTR >Mature_521_residues MRHSFPSVTRPLTAAGLALMLLGGAGHAAAETSLTYVQGTEIDTLDPAVSRSTPSQIVITHIFNKLVSWDGPGFKKIVPD LAESWNVSADGKVWTFNLRKGVKFHDGTPLDAAAVKFNLDRLRSPELGSPNRSYYAAIETVEAPSTYVVTIAAKEPSPTL LEILTEEWASISSPTAIEKRGRAYGRNPVGTGPYVFKSWIPNERAEIVRNPDYFGTPGKTDRLVFRPVPENAARVIELKT GNADVAANIAPELTGDFKGSDKMVLQQAPSAFQVFFELNVTKPPFDDVRVRKAVNVAIDRQAIVDKILLGYGRVPVSPFP EGTQARRIFPAYKYNPDEARRLLKAAFPGGYPGVVTMWTPSGRYTKDRAAAEAVQGYLNAVGLKTEFKVWEWASYQKELY RAEPGKGTGKGSNGANMWLLGTGIPNADIRLRRKLSTGDPSNLTGYSNPMVDGLLAKAAGEMNYDKRMATYGDVQRVVWE LEPNTIPLFDQVQLIGQRKGVKGLTVYSDEIVEFNNATVTR
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=519, Percent_Identity=31.4065510597302, Blast_Score=209, Evalue=4e-55, Organism=Escherichia coli, GI1787762, Length=508, Percent_Identity=26.5748031496063, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI1787495, Length=508, Percent_Identity=26.5748031496063, Blast_Score=142, Evalue=7e-35, Organism=Escherichia coli, GI1789966, Length=547, Percent_Identity=26.691042047532, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI87081878, Length=533, Percent_Identity=24.390243902439, Blast_Score=113, Evalue=3e-26, Organism=Escherichia coli, GI1789887, Length=340, Percent_Identity=28.5294117647059, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1787551, Length=509, Percent_Identity=23.1827111984283, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1789397, Length=496, Percent_Identity=24.7983870967742, Blast_Score=101, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 57129; Mature: 57129
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: PS01040 SBP_BACTERIAL_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHSFPSVTRPLTAAGLALMLLGGAGHAAAETSLTYVQGTEIDTLDPAVSRSTPSQIVIT CCCCCCCHHCHHHHHHHHHEEECCCCCCHHCCEEEEEECCCCCCCCCHHCCCCCCHHHHH HIFNKLVSWDGPGFKKIVPDLAESWNVSADGKVWTFNLRKGVKFHDGTPLDAAAVKFNLD HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCCHHEEEEEHH RLRSPELGSPNRSYYAAIETVEAPSTYVVTIAAKEPSPTLLEILTEEWASISSPTAIEKR HCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHH GRAYGRNPVGTGPYVFKSWIPNERAEIVRNPDYFGTPGKTDRLVFRPVPENAARVIELKT CHHCCCCCCCCCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEC GNADVAANIAPELTGDFKGSDKMVLQQAPSAFQVFFELNVTKPPFDDVRVRKAVNVAIDR CCCCEEECCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH QAIVDKILLGYGRVPVSPFPEGTQARRIFPAYKYNPDEARRLLKAAFPGGYPGVVTMWTP HHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC SGRYTKDRAAAEAVQGYLNAVGLKTEFKVWEWASYQKELYRAEPGKGTGKGSNGANMWLL CCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE GTGIPNADIRLRRKLSTGDPSNLTGYSNPMVDGLLAKAAGEMNYDKRMATYGDVQRVVWE ECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEE LEPNTIPLFDQVQLIGQRKGVKGLTVYSDEIVEFNNATVTR ECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCC >Mature Secondary Structure MRHSFPSVTRPLTAAGLALMLLGGAGHAAAETSLTYVQGTEIDTLDPAVSRSTPSQIVIT CCCCCCCHHCHHHHHHHHHEEECCCCCCHHCCEEEEEECCCCCCCCCHHCCCCCCHHHHH HIFNKLVSWDGPGFKKIVPDLAESWNVSADGKVWTFNLRKGVKFHDGTPLDAAAVKFNLD HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCCHHEEEEEHH RLRSPELGSPNRSYYAAIETVEAPSTYVVTIAAKEPSPTLLEILTEEWASISSPTAIEKR HCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHH GRAYGRNPVGTGPYVFKSWIPNERAEIVRNPDYFGTPGKTDRLVFRPVPENAARVIELKT CHHCCCCCCCCCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEC GNADVAANIAPELTGDFKGSDKMVLQQAPSAFQVFFELNVTKPPFDDVRVRKAVNVAIDR CCCCEEECCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH QAIVDKILLGYGRVPVSPFPEGTQARRIFPAYKYNPDEARRLLKAAFPGGYPGVVTMWTP HHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECC SGRYTKDRAAAEAVQGYLNAVGLKTEFKVWEWASYQKELYRAEPGKGTGKGSNGANMWLL CCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE GTGIPNADIRLRRKLSTGDPSNLTGYSNPMVDGLLAKAAGEMNYDKRMATYGDVQRVVWE ECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEE LEPNTIPLFDQVQLIGQRKGVKGLTVYSDEIVEFNNATVTR ECCCCCCHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA