| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790195
Identifier: 91790195
GI number: 91790195
Start: 4600085
End: 4601134
Strand: Reverse
Name: 91790195
Synonym: Bpro_4360
Alternate gene names: NA
Gene position: 4601134-4600085 (Counterclockwise)
Preceding gene: 91790196
Following gene: 91790194
Centisome position: 88.48
GC content: 58.38
Gene sequence:
>1050_bases ATGAAGCAAGCAAAACTGTATTTGAGAATTTCAGCCGGCTTACTCGCTGCGGCCAGCGCAGTCTTCTTCCACCAGGCGGC ACCGGCGGCCGGTCCCGCCCAGGTCGTGGTCGCCTCTTACGGAGGCTCCTTCCAAGACGCCCAGACAAAGGCTTTTTTCG ATCCATACGCCAGAGCAACGGGTGCCAAAGTCATCGGCACGACCGGTACTGGGCATGCCAAGATCAAAGCCATGGTCACG AGCGGCAACGTCACTTGGGACGTGGTCTCGGCCGACGCCGCGGCCTTTGAGAACGAGGTGAAGGATGATCTTCTTCAGCC GCTCGATTATTCGGTGATCAAGGCCGATGGCATCCCGGCCAGCTTCCGCACAAAATACGGCATCGGCTACATGAAGTTCG CACAGAATCTGGCGTGGAACAAAGAAAAGTTTCCGCATGGACTTACCCCGGCACAGTTCTTCGACCCAACGGTGAAAGCG CGTCGCGTGATGTTGGCGGTGCCGTACTACAACCTCGAATTCGCGCTGCTGGCTGACGGTGTGAAGCCGGCCGAACTTTA TCCGCTGGACGTGGCCCGCGCCCTCAGAGTTATCGACCGGGTCAAGCACCAGATTGTCGGCTTCAAGTCGCCCTCGGATG TCCAAGCGCTCATCCAGCAGGGCGAGGTCGACGTCGCCTTTGCCCCGGGCGGTCGCGTCCAAAATGCCATAAAGGCCGGT GCCAACTGGGCTTATGGGTGGAGCTCAGCGATCACGGTGGTCGAATATTGGGCGGTGGTCAAGGGTGCTCCGAATGCAGC AGAGGCGATGAAATTCATCAATTTCGCCGTTCAGCCAAAGCCGCAGGCGGAACTTCCTCGCCATATCTTTTATGGCCCGA CCAATGTCGACGCGCTGAAGCTTATTGACGGTGCAGCGCTCTCAGCCGTCGCCAAGGATCTGCCGGGCAATCCGGCTAAC GAGAAGTTCGGCGCAATTCTTAACTCGAAATGGTGGAACGAGAACCTCGAGTCTGTGACGGCCCGCTGGAACACGTACGT CTTGCGCTAA
Upstream 100 bases:
>100_bases CCCGGCGAACCCGTCGTCGCGCGATGGGCGCCGACATTCGTTGCCGCTCTTCCGGCTGAAAAATCTTCCTGAAACAGAGT CTTTTTAAAGGAGTGCAACC
Downstream 100 bases:
>100_bases CAGCGCGTAAATAGGAGAACGCGAAGATGACACGCAGCAGTAGGTTCGTAAATTGGGTTGTAAATTGGGCGCGGTTCTTA CTGCTGACTCCAATAGCCAT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MKQAKLYLRISAGLLAAASAVFFHQAAPAAGPAQVVVASYGGSFQDAQTKAFFDPYARATGAKVIGTTGTGHAKIKAMVT SGNVTWDVVSADAAAFENEVKDDLLQPLDYSVIKADGIPASFRTKYGIGYMKFAQNLAWNKEKFPHGLTPAQFFDPTVKA RRVMLAVPYYNLEFALLADGVKPAELYPLDVARALRVIDRVKHQIVGFKSPSDVQALIQQGEVDVAFAPGGRVQNAIKAG ANWAYGWSSAITVVEYWAVVKGAPNAAEAMKFINFAVQPKPQAELPRHIFYGPTNVDALKLIDGAALSAVAKDLPGNPAN EKFGAILNSKWWNENLESVTARWNTYVLR
Sequences:
>Translated_349_residues MKQAKLYLRISAGLLAAASAVFFHQAAPAAGPAQVVVASYGGSFQDAQTKAFFDPYARATGAKVIGTTGTGHAKIKAMVT SGNVTWDVVSADAAAFENEVKDDLLQPLDYSVIKADGIPASFRTKYGIGYMKFAQNLAWNKEKFPHGLTPAQFFDPTVKA RRVMLAVPYYNLEFALLADGVKPAELYPLDVARALRVIDRVKHQIVGFKSPSDVQALIQQGEVDVAFAPGGRVQNAIKAG ANWAYGWSSAITVVEYWAVVKGAPNAAEAMKFINFAVQPKPQAELPRHIFYGPTNVDALKLIDGAALSAVAKDLPGNPAN EKFGAILNSKWWNENLESVTARWNTYVLR >Mature_349_residues MKQAKLYLRISAGLLAAASAVFFHQAAPAAGPAQVVVASYGGSFQDAQTKAFFDPYARATGAKVIGTTGTGHAKIKAMVT SGNVTWDVVSADAAAFENEVKDDLLQPLDYSVIKADGIPASFRTKYGIGYMKFAQNLAWNKEKFPHGLTPAQFFDPTVKA RRVMLAVPYYNLEFALLADGVKPAELYPLDVARALRVIDRVKHQIVGFKSPSDVQALIQQGEVDVAFAPGGRVQNAIKAG ANWAYGWSSAITVVEYWAVVKGAPNAAEAMKFINFAVQPKPQAELPRHIFYGPTNVDALKLIDGAALSAVAKDLPGNPAN EKFGAILNSKWWNENLESVTARWNTYVLR
Specific function: Unknown
COG id: COG0687
COG function: function code E; Spermidine/putrescine-binding periplasmic protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37735; Mature: 37735
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQAKLYLRISAGLLAAASAVFFHQAAPAAGPAQVVVASYGGSFQDAQTKAFFDPYARAT CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHCHHHHHC GAKVIGTTGTGHAKIKAMVTSGNVTWDVVSADAAAFENEVKDDLLQPLDYSVIKADGIPA CCEEEECCCCCCEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCC SFRTKYGIGYMKFAQNLAWNKEKFPHGLTPAQFFDPTVKARRVMLAVPYYNLEFALLADG CHHHHCCCHHHHHHHHHCCCHHCCCCCCCCHHHCCCCHHHCEEEEEECCCCEEEEEEECC VKPAELYPLDVARALRVIDRVKHQIVGFKSPSDVQALIQQGEVDVAFAPGGRVQNAIKAG CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHCC ANWAYGWSSAITVVEYWAVVKGAPNAAEAMKFINFAVQPKPQAELPRHIFYGPTNVDALK CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCHHH LIDGAALSAVAKDLPGNPANEKFGAILNSKWWNENLESVTARWNTYVLR HHCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHEEEEEC >Mature Secondary Structure MKQAKLYLRISAGLLAAASAVFFHQAAPAAGPAQVVVASYGGSFQDAQTKAFFDPYARAT CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHCHHHHHC GAKVIGTTGTGHAKIKAMVTSGNVTWDVVSADAAAFENEVKDDLLQPLDYSVIKADGIPA CCEEEECCCCCCEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCC SFRTKYGIGYMKFAQNLAWNKEKFPHGLTPAQFFDPTVKARRVMLAVPYYNLEFALLADG CHHHHCCCHHHHHHHHHCCCHHCCCCCCCCHHHCCCCHHHCEEEEEECCCCEEEEEEECC VKPAELYPLDVARALRVIDRVKHQIVGFKSPSDVQALIQQGEVDVAFAPGGRVQNAIKAG CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHCC ANWAYGWSSAITVVEYWAVVKGAPNAAEAMKFINFAVQPKPQAELPRHIFYGPTNVDALK CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCHHH LIDGAALSAVAKDLPGNPANEKFGAILNSKWWNENLESVTARWNTYVLR HHCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA