| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91790189
Identifier: 91790189
GI number: 91790189
Start: 4592642
End: 4593721
Strand: Reverse
Name: 91790189
Synonym: Bpro_4354
Alternate gene names: NA
Gene position: 4593721-4592642 (Counterclockwise)
Preceding gene: 91790190
Following gene: 91790188
Centisome position: 88.34
GC content: 53.15
Gene sequence:
>1080_bases ATGAAACGTAGAGATCTTATAAAAGCAGCCAGCTTTGCTGCAGTGGGCTCATTTGGAGTGACCCGCGCTTTTTCATTCGA AGGTCCCGAACTCTACCCGGGTGAAAAAGTCTTGTACGAAGCTGCGGAAAAAGAAGGCTTGGTCGTCTCTTTTGACACGG GGCCGGAATGGGCAAATTGGAAATCACTGTTCCGCGAGTTCAAGAAGCGCTATCCAGAAGTCGAACTCACCTATAACGAC CTGGGCTCTGCTGCAACTGTCGTTGCCCTGGAGAAGACGCGCCGCCGGCCTCAGGCAGACACTGCCTACTATTTTGCCGC TTCAGCCGTTGATGCAGTGAAGAAGGATGTCGTCGCACCATTTCAGCCGATTAACTTTGAGAAGCTTCCGGCTGTGTTTC GAGAAGCGAGCGGCAAGTGGTTCACGATCCACACGTTAAATATTGCCTTCCTGGTGAATAAAAAACTCGTCAAAAACTCC CCTACCAGCTGGGCCGACCTGCTTAAACCGGAGTTTAAGAACTCAGTTGTTTACCTTGATCCCCGGACAACAGGCGTGGG CCAAGTGATGGTGTTTGCCGCTGCATACGCGACTGGAGGATCGGTGGATAACGTGAAGCCGGGGATTGATTATCTCGGGC AACTCCATGCGCTAGGTAATGTGCAGCGCGTCGAGGGAACCACCCCTTATGCGAAGTTCCTCAAAGGTGAAATACCTGTG TGGATCAGCTATGAAAACGATGGCCTCAAAGCGAAACACGTGGATGGTATGGGCGATGCCCTAGAAGTCATCATTCCCAA GGAGGCGAGCGTTGCCGCGCCTTACGCCATTAGTCTTGTCAAGAACGCCCCAAATCCGAACAGCGGCAAGCTCTGGCTGA ATTTCATCATGAGCGAAGTGGGGCAAGGACTCTTCGCTCAAGGATTCGTTCGTCCTTCGGTCCCAGGTGTGCGGCTAAGC GCGGACATTCAAGCAAAAATGCCGGCTGCACCGCAGCTGCGCCCGCTTGATGTTGTAAAGGCGTCCGAGCGCAAGGCGGA GATTGACCGCCTTTGGGCACAAGCTGTTCTTACCAAGTAA
Upstream 100 bases:
>100_bases GGTCGAGTCGCGCCATTTGGCTGCCGCGTCGATTGCCATTTCACCGAAGCATATTCGCTTGCTTGATACCTAGTCGCTTT TCCACCAACAGGAGATATTC
Downstream 100 bases:
>100_bases TAACCCTTAAGCGGTTTGACTATGAAGCGATATGGCGCTTGGCCCGCATGGCTGTTCATGCTGGCCTTCTTTTTCCTACC CTTGGCAGCACTGGTGCCAG
Product: putative ABC transport system, substrate-binding exported protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MKRRDLIKAASFAAVGSFGVTRAFSFEGPELYPGEKVLYEAAEKEGLVVSFDTGPEWANWKSLFREFKKRYPEVELTYND LGSAATVVALEKTRRRPQADTAYYFAASAVDAVKKDVVAPFQPINFEKLPAVFREASGKWFTIHTLNIAFLVNKKLVKNS PTSWADLLKPEFKNSVVYLDPRTTGVGQVMVFAAAYATGGSVDNVKPGIDYLGQLHALGNVQRVEGTTPYAKFLKGEIPV WISYENDGLKAKHVDGMGDALEVIIPKEASVAAPYAISLVKNAPNPNSGKLWLNFIMSEVGQGLFAQGFVRPSVPGVRLS ADIQAKMPAAPQLRPLDVVKASERKAEIDRLWAQAVLTK
Sequences:
>Translated_359_residues MKRRDLIKAASFAAVGSFGVTRAFSFEGPELYPGEKVLYEAAEKEGLVVSFDTGPEWANWKSLFREFKKRYPEVELTYND LGSAATVVALEKTRRRPQADTAYYFAASAVDAVKKDVVAPFQPINFEKLPAVFREASGKWFTIHTLNIAFLVNKKLVKNS PTSWADLLKPEFKNSVVYLDPRTTGVGQVMVFAAAYATGGSVDNVKPGIDYLGQLHALGNVQRVEGTTPYAKFLKGEIPV WISYENDGLKAKHVDGMGDALEVIIPKEASVAAPYAISLVKNAPNPNSGKLWLNFIMSEVGQGLFAQGFVRPSVPGVRLS ADIQAKMPAAPQLRPLDVVKASERKAEIDRLWAQAVLTK >Mature_359_residues MKRRDLIKAASFAAVGSFGVTRAFSFEGPELYPGEKVLYEAAEKEGLVVSFDTGPEWANWKSLFREFKKRYPEVELTYND LGSAATVVALEKTRRRPQADTAYYFAASAVDAVKKDVVAPFQPINFEKLPAVFREASGKWFTIHTLNIAFLVNKKLVKNS PTSWADLLKPEFKNSVVYLDPRTTGVGQVMVFAAAYATGGSVDNVKPGIDYLGQLHALGNVQRVEGTTPYAKFLKGEIPV WISYENDGLKAKHVDGMGDALEVIIPKEASVAAPYAISLVKNAPNPNSGKLWLNFIMSEVGQGLFAQGFVRPSVPGVRLS ADIQAKMPAAPQLRPLDVVKASERKAEIDRLWAQAVLTK
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 39401; Mature: 39401
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRDLIKAASFAAVGSFGVTRAFSFEGPELYPGEKVLYEAAEKEGLVVSFDTGPEWANW CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCH KSLFREFKKRYPEVELTYNDLGSAATVVALEKTRRRPQADTAYYFAASAVDAVKKDVVAP HHHHHHHHHHCCEEEEECCCCCCHHEEEEEHHHCCCCCCCHHEEHHHHHHHHHHHHHCCC FQPINFEKLPAVFREASGKWFTIHTLNIAFLVNKKLVKNSPTSWADLLKPEFKNSVVYLD CCCCCHHHHHHHHHHCCCCEEEEEEEEEEEEECHHHHCCCCCCHHHHHCHHHCCCEEEEC PRTTGVGQVMVFAAAYATGGSVDNVKPGIDYLGQLHALGNVQRVEGTTPYAKFLKGEIPV CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCE WISYENDGLKAKHVDGMGDALEVIIPKEASVAAPYAISLVKNAPNPNSGKLWLNFIMSEV EEEECCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH GQGLFAQGFVRPSVPGVRLSADIQAKMPAAPQLRPLDVVKASERKAEIDRLWAQAVLTK CCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKRRDLIKAASFAAVGSFGVTRAFSFEGPELYPGEKVLYEAAEKEGLVVSFDTGPEWANW CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCH KSLFREFKKRYPEVELTYNDLGSAATVVALEKTRRRPQADTAYYFAASAVDAVKKDVVAP HHHHHHHHHHCCEEEEECCCCCCHHEEEEEHHHCCCCCCCHHEEHHHHHHHHHHHHHCCC FQPINFEKLPAVFREASGKWFTIHTLNIAFLVNKKLVKNSPTSWADLLKPEFKNSVVYLD CCCCCHHHHHHHHHHCCCCEEEEEEEEEEEEECHHHHCCCCCCHHHHHCHHHCCCEEEEC PRTTGVGQVMVFAAAYATGGSVDNVKPGIDYLGQLHALGNVQRVEGTTPYAKFLKGEIPV CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCE WISYENDGLKAKHVDGMGDALEVIIPKEASVAAPYAISLVKNAPNPNSGKLWLNFIMSEV EEEECCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH GQGLFAQGFVRPSVPGVRLSADIQAKMPAAPQLRPLDVVKASERKAEIDRLWAQAVLTK CCCHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]