Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91790152

Identifier: 91790152

GI number: 91790152

Start: 4548058

End: 4549131

Strand: Reverse

Name: 91790152

Synonym: Bpro_4315

Alternate gene names: NA

Gene position: 4549131-4548058 (Counterclockwise)

Preceding gene: 91790153

Following gene: 91790151

Centisome position: 87.48

GC content: 62.66

Gene sequence:

>1074_bases
ATGACGAAGAGACAAATTCTGGCCGCTGCAGCGGTATCCCTTGCCATGCCAGTCATGGCGCAAACCGCTTCCTCGGTGAC
CCTGTACGGGATCCTCAATGTGGCTGTCCGCTCCCAGACTGGCCTGACGAGTACCTACGGGCGATCGCCGGTTGACACCA
CCGTTGTTGCGAGCGGCGTGGGCCCCACGAGCCGCTGGGGCCTTCGCGGAACCGAGGATCTTGGCGGCGGGCTGCGCGCG
ACGTTCAATCTGGAATCTGGAATCAACGTCGATACGGGCACTCAGGCCAATGCGGTCACCTACTTTGACCGCGCCTCGAC
CGTCGGACTCGCCGGAGCGTGGGGTACGACGACAGTGGGTCGTCAGAACACATTGCTCGCTGACTCCGCTGGCGTTGCCG
ACCCGATCGGGCTCAGGTTCGCGGGTCTGAACCCGAACATTCAGAACGTCAGTCTCACGGGCCATCAGCTCGGTGTCGAG
TACGGCACCACGGGCTCCAGTACTGCGTCGAACCGGCAGAACAACTCGATCAAGTACTCGGTTCCGATCGGCCCCGTGGT
GGCTCGCGCGATGCACAGCTTTGGCGAAGTGGCGCAGTCGTCCTCCAGGAAAAGCACTTCAGGACTGGGAGTCGACTACC
TGACGGAAGAGCTGAAGATCACGACGGCGTACACCCGCTTCAAGGATGCCAACGACCGGCGGTTGACGGCCGCGAACGTG
GGCGCCAGCTGGCTCGCACTTCCGTCGCTGCGCGTCATGGCGAACATGGGTTACAACCGCGGCTTCACCTCAGCGACCGC
CGAGGCTACCAACCGCATCGTTGCCGGCGGCGTCAACTATTCCATTGCACCCGCCATCGATCTCCTGGCCGGGTACTACA
AGGTGGATCGCCGCCGCACTGCGCAGCCCGACGACGGCTTCAAGCGCTTGCTCGCCTTCGTCGAGTACAAGCTCTCGCGA
CGCAGCAAGGTGTACCTGGAGCTGGATACAACGCGCTGGAAGGGCAATTACCTGGGGGCGGGTAACAAGTCGACGTCCAA
TGGCGTCAGTCTGGGCATTACGCACGCGTTCTAA

Upstream 100 bases:

>100_bases
ACCAAACCCATCAGACATAGCTGCCCGTGCCGCGTGTGGCGGGCTGCAGCGATCACCGTTGCAGAAGAACCCAACAACCA
CTTGGAGAAGGAAAAGAAAG

Downstream 100 bases:

>100_bases
CTGTACTCCCCAGGCTCTCCAGTTTTGAAGCCTCTTGCACAAGCAACCAGGCTTCATTTTTTTCTTTAGAAGGCACTTGC
ATGTTGAATAGACGACAAGC

Product: putative transmembrane outer membrane porin signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MTKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGVGPTSRWGLRGTEDLGGGLRA
TFNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVGRQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVE
YGTTGSSTASNRQNNSIKYSVPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANV
GASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRTAQPDDGFKRLLAFVEYKLSR
RSKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF

Sequences:

>Translated_357_residues
MTKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGVGPTSRWGLRGTEDLGGGLRA
TFNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVGRQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVE
YGTTGSSTASNRQNNSIKYSVPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANV
GASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRTAQPDDGFKRLLAFVEYKLSR
RSKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF
>Mature_356_residues
TKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGVGPTSRWGLRGTEDLGGGLRAT
FNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVGRQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVEY
GTTGSSTASNRQNNSIKYSVPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANVG
ASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRTAQPDDGFKRLLAFVEYKLSRR
SKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 37714; Mature: 37583

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGV
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEECCC
GPTSRWGLRGTEDLGGGLRATFNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVG
CCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCC
RQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVEYGTTGSSTASNRQNNSIKYS
CCCEEEECCCCCCCCCCEEEECCCCCCCEEEECCCEECEEECCCCCCCCCCCCCCCEEEE
VPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEEEEEEHCCCCCCCCEEEEECC
GASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRT
CCHHHHHCHHHHHHHCCCCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC
AQPDDGFKRLLAFVEYKLSRRSKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF
CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCEECCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
TKRQILAAAAVSLAMPVMAQTASSVTLYGILNVAVRSQTGLTSTYGRSPVDTTVVASGV
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEECCC
GPTSRWGLRGTEDLGGGLRATFNLESGINVDTGTQANAVTYFDRASTVGLAGAWGTTTVG
CCCCCCCCCCCHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCC
RQNTLLADSAGVADPIGLRFAGLNPNIQNVSLTGHQLGVEYGTTGSSTASNRQNNSIKYS
CCCEEEECCCCCCCCCCEEEECCCCCCCEEEECCCEECEEECCCCCCCCCCCCCCCEEEE
VPIGPVVARAMHSFGEVAQSSSRKSTSGLGVDYLTEELKITTAYTRFKDANDRRLTAANV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEEEEEEHCCCCCCCCEEEEECC
GASWLALPSLRVMANMGYNRGFTSATAEATNRIVAGGVNYSIAPAIDLLAGYYKVDRRRT
CCHHHHHCHHHHHHHCCCCCCCCCHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC
AQPDDGFKRLLAFVEYKLSRRSKVYLELDTTRWKGNYLGAGNKSTSNGVSLGITHAF
CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCEECCCEECCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]