| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is dsbD [H]
Identifier: 91790095
GI number: 91790095
Start: 4486167
End: 4488383
Strand: Direct
Name: dsbD [H]
Synonym: Bpro_4257
Alternate gene names: 91790095
Gene position: 4486167-4488383 (Clockwise)
Preceding gene: 91790089
Following gene: 91790096
Centisome position: 86.27
GC content: 66.98
Gene sequence:
>2217_bases ATGCCGCCGTCCTTTGCTCACACATCCACCATGAATTTCAAGTGCTCTCCGTTTGCCGCGTTTTTTGCTTCTGTTTTGAT AGCTGTTGGCGCAATAAGCACGCCGTCTCAGGCCCAGAATTTCCAGACAAACATCCTGAACCAGGGTAGCCGCAATGAGG CGGGCGCACTGGTAACCACCGAGCAGGTGCGCGCCGAACTGCTGGCCTGGGCGCCCGAGGGCGTGGAGGCAGGCAAGCCG GTCTGGCTGGGCCTGCAGCTGACGCACCAGCCCGAATGGCACACCTACTGGAAAAATTCCGGCGATTCCGGCCTGCCAAC CCAGCTGACCTGGCAGCTGCCGGCCGGCATCACAGCAGGCGAGATCGCCTGGCCCACACCGAAAAAAATACCGGTGGGCA CCTTGGCCAACTACGGCTATGAAAACACCGTGCTGCTGCCCGTGCCGCTGACGGTGGCGCCCACATTCAACGCTGCGCAG CTCAACGTCAAGCTCCATGCCACCTGGCTGGTGTGCCGCAAGGAGTGCATCCCGCAGGAAGGCGAGTTCACGCTGAGCCT GCCGGTCAAAAGCTCCACGGCGCTGAGCGGCCAGGCCTTTCAGGCCGCTTTTGCCGCCACGCCCACCGCCTTGCCGGCGG GCGGCAGCCAGGTCGAAGTCAGCGGCAAGGCCATTAAGGTCGCCCTGAGCGGGCTGCCGGCTGGCCTGCAGGGCAAAACC CTGGAATTTTTCCCCGAAACCGGCAGCGTGATTGAGCCGGCGGCGCCGTGGCAGCAAGCCTGGCAGGGCGCGGTGTGGAC GGCGCAAGTGCCGCTGTCCGGCCAGCGTACCGCCAGCCCCGCGCAAATGCCGCTGGTGGTTGCTTTCAACCAGAGCGCTT ATCGCATCGAAGCCCCCGTCAAGGGGACCTGGCCGGCCGTGGCCGCTGCCGCCGTGGTGCCGCCCGCGCTGGAAGCGGCC CTGAAGGCCAATGCCTCGGCCGGTGCCGCGCCAGTGCAAAGCAGCGGGCCGCCCCTGAGCCTGCTGGCCGCGTTGTTCGG CGCGCTGGTGGGAGGGATGATCCTGAACCTGATGCCCTGCGTGTTTCCGGTGCTGGCCATCAAGGTGGTGAGCTTTGTGC ATGTGAAGGACCCGGGCACGCGCCTGAGCACTGGCCTGGCCTACACCGCCGGCGTGGTGCTGTCGTTTTTGGCGCTGGGC GCCCTGCTGCTGGGCCTGCGCGCCGCGGGCGAGCAACTGGGCTGGGGCTTTCAGCTGCAAAACCCGGCGGTGGTGGCCGC GCTGGCGGCCCTGTTCACGCTGCTGGGCCTGAACCTGGCGGGCCTCTTCGAGTTTGGCCACTTCCTGCCCGAACGGATCA CCAGCCTGCAGTCCACGCGCCCGACCATCAACGCTTTCCTGTCGGGCGTGCTGGCCAGCGCGATTGCCTCCCCCTGTACC GCGCCTTTCATGGGCGCCTCGCTGGGGTATGCGGTGGGCTTGCCGGCGCTGCAGGCGCTGGCCATGTTTGGCATGATCGG CCTGGGCATGGCCTTGCCCTACCTGGCCGCCAGTGCGGTGCCGGCCGTGGCCCGCGTGTTGCCGCGTCCCGGCCACTGGA TGGTGACCTTCCGCCAGCTGATGGCCTTTCCGATGTTTGCCACCGTGGCCTGGCTGGTCTGGGTGCTGGGCCAGCAAAGC GGCATCGACGGCGCGGGCGCGCTGCTCGCCCTGCTGGTGCTGATGGCGCTGGTGCTCTGGTCGCTGACCCTGAAGGGTCG GGCCCGGGCCGTATTTGCGACTTTTTCAATAGCGCTTGCCGCAATTGGGGTGCTGACTGTTGGCCAAACCATCACCAAGC CTTTGCAGGCGTCCGCGGGGCCCGCGCTGGCCACCTCCGGAAGATGGCAGGCCTGGGAGCCGGGCCGCGTCGACCAGCTG ACGGCCCAGGGCCAGAGCGTGCTGGTGGATTTCACCGCCGCATGGTGCGTCACCTGCCAGTACAACAAGAAAACGACGCT GGCCAACACCGCCGTGCTGGCTGACATCGATGCGAAAAACGTCGCGCTGCTGCGCGCCGACTGGACACGCCGCGACCCGG CGGTGACGGCGGCGCTGACCCAGCTGGGCCGCAGCGGCGTACCGGTGTATGCCATCTACAAACCAGGCCACGCGCCGGTC ATCCTGTCGGAAGTGCTGTCGGTCGATGACCTGCGGACCGAACTGGCCAAGCTGTGA
Upstream 100 bases:
>100_bases GCCATCCCTGAGTTTGCCCTGATTGGGCCCTCCTTCGATTGCGGGGCGACCCGTTTTGACAAACAGGCCCTCAAGAAAGG CCAGGAACACCCCGGAACTA
Downstream 100 bases:
>100_bases CCTTTGTACGAAGTGGTAACGCCGCGGATAAGGCCGTCAGAAAATGGTAAGTTAGCTAGTATAGTGACCCCTCACAGCCC GTGAGGTATTTGCCATGACC
Product: thiol-disulfide interchange protein DsbD-like protein
Products: NA
Alternate protein names: Protein-disulfide reductase; Disulfide reductase [H]
Number of amino acids: Translated: 738; Mature: 737
Protein sequence:
>738_residues MPPSFAHTSTMNFKCSPFAAFFASVLIAVGAISTPSQAQNFQTNILNQGSRNEAGALVTTEQVRAELLAWAPEGVEAGKP VWLGLQLTHQPEWHTYWKNSGDSGLPTQLTWQLPAGITAGEIAWPTPKKIPVGTLANYGYENTVLLPVPLTVAPTFNAAQ LNVKLHATWLVCRKECIPQEGEFTLSLPVKSSTALSGQAFQAAFAATPTALPAGGSQVEVSGKAIKVALSGLPAGLQGKT LEFFPETGSVIEPAAPWQQAWQGAVWTAQVPLSGQRTASPAQMPLVVAFNQSAYRIEAPVKGTWPAVAAAAVVPPALEAA LKANASAGAAPVQSSGPPLSLLAALFGALVGGMILNLMPCVFPVLAIKVVSFVHVKDPGTRLSTGLAYTAGVVLSFLALG ALLLGLRAAGEQLGWGFQLQNPAVVAALAALFTLLGLNLAGLFEFGHFLPERITSLQSTRPTINAFLSGVLASAIASPCT APFMGASLGYAVGLPALQALAMFGMIGLGMALPYLAASAVPAVARVLPRPGHWMVTFRQLMAFPMFATVAWLVWVLGQQS GIDGAGALLALLVLMALVLWSLTLKGRARAVFATFSIALAAIGVLTVGQTITKPLQASAGPALATSGRWQAWEPGRVDQL TAQGQSVLVDFTAAWCVTCQYNKKTTLANTAVLADIDAKNVALLRADWTRRDPAVTAALTQLGRSGVPVYAIYKPGHAPV ILSEVLSVDDLRTELAKL
Sequences:
>Translated_738_residues MPPSFAHTSTMNFKCSPFAAFFASVLIAVGAISTPSQAQNFQTNILNQGSRNEAGALVTTEQVRAELLAWAPEGVEAGKP VWLGLQLTHQPEWHTYWKNSGDSGLPTQLTWQLPAGITAGEIAWPTPKKIPVGTLANYGYENTVLLPVPLTVAPTFNAAQ LNVKLHATWLVCRKECIPQEGEFTLSLPVKSSTALSGQAFQAAFAATPTALPAGGSQVEVSGKAIKVALSGLPAGLQGKT LEFFPETGSVIEPAAPWQQAWQGAVWTAQVPLSGQRTASPAQMPLVVAFNQSAYRIEAPVKGTWPAVAAAAVVPPALEAA LKANASAGAAPVQSSGPPLSLLAALFGALVGGMILNLMPCVFPVLAIKVVSFVHVKDPGTRLSTGLAYTAGVVLSFLALG ALLLGLRAAGEQLGWGFQLQNPAVVAALAALFTLLGLNLAGLFEFGHFLPERITSLQSTRPTINAFLSGVLASAIASPCT APFMGASLGYAVGLPALQALAMFGMIGLGMALPYLAASAVPAVARVLPRPGHWMVTFRQLMAFPMFATVAWLVWVLGQQS GIDGAGALLALLVLMALVLWSLTLKGRARAVFATFSIALAAIGVLTVGQTITKPLQASAGPALATSGRWQAWEPGRVDQL TAQGQSVLVDFTAAWCVTCQYNKKTTLANTAVLADIDAKNVALLRADWTRRDPAVTAALTQLGRSGVPVYAIYKPGHAPV ILSEVLSVDDLRTELAKL >Mature_737_residues PPSFAHTSTMNFKCSPFAAFFASVLIAVGAISTPSQAQNFQTNILNQGSRNEAGALVTTEQVRAELLAWAPEGVEAGKPV WLGLQLTHQPEWHTYWKNSGDSGLPTQLTWQLPAGITAGEIAWPTPKKIPVGTLANYGYENTVLLPVPLTVAPTFNAAQL NVKLHATWLVCRKECIPQEGEFTLSLPVKSSTALSGQAFQAAFAATPTALPAGGSQVEVSGKAIKVALSGLPAGLQGKTL EFFPETGSVIEPAAPWQQAWQGAVWTAQVPLSGQRTASPAQMPLVVAFNQSAYRIEAPVKGTWPAVAAAAVVPPALEAAL KANASAGAAPVQSSGPPLSLLAALFGALVGGMILNLMPCVFPVLAIKVVSFVHVKDPGTRLSTGLAYTAGVVLSFLALGA LLLGLRAAGEQLGWGFQLQNPAVVAALAALFTLLGLNLAGLFEFGHFLPERITSLQSTRPTINAFLSGVLASAIASPCTA PFMGASLGYAVGLPALQALAMFGMIGLGMALPYLAASAVPAVARVLPRPGHWMVTFRQLMAFPMFATVAWLVWVLGQQSG IDGAGALLALLVLMALVLWSLTLKGRARAVFATFSIALAAIGVLTVGQTITKPLQASAGPALATSGRWQAWEPGRVDQLT AQGQSVLVDFTAAWCVTCQYNKKTTLANTAVLADIDAKNVALLRADWTRRDPAVTAALTQLGRSGVPVYAIYKPGHAPVI LSEVLSVDDLRTELAKL
Specific function: Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a
COG id: COG4232
COG function: function code OC; Thiol:disulfide interchange protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1790578, Length=509, Percent_Identity=27.3084479371316, Blast_Score=81, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003834 - InterPro: IPR022910 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF02683 DsbD; PF00085 Thioredoxin [H]
EC number: =1.8.1.8 [H]
Molecular weight: Translated: 77099; Mature: 76968
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPSFAHTSTMNFKCSPFAAFFASVLIAVGAISTPSQAQNFQTNILNQGSRNEAGALVTT CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEH EQVRAELLAWAPEGVEAGKPVWLGLQLTHQPEWHTYWKNSGDSGLPTQLTWQLPAGITAG HHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCHHCCCCCCCCCCCEEEEECCCCCCCC EIAWPTPKKIPVGTLANYGYENTVLLPVPLTVAPTFNAAQLNVKLHATWLVCRKECIPQE CCCCCCCCCCCCCHHHCCCCCCEEEEEECEEECCCCCCEEEEEEEEEHHHHHHHHHCCCC GEFTLSLPVKSSTALSGQAFQAAFAATPTALPAGGSQVEVSGKAIKVALSGLPAGLQGKT CCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCE LEFFPETGSVIEPAAPWQQAWQGAVWTAQVPLSGQRTASPAQMPLVVAFNQSAYRIEAPV EEECCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCC KGTWPAVAAAAVVPPALEAALKANASAGAAPVQSSGPPLSLLAALFGALVGGMILNLMPC CCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VFPVLAIKVVSFVHVKDPGTRLSTGLAYTAGVVLSFLALGALLLGLRAAGEQLGWGFQLQ HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC NPAVVAALAALFTLLGLNLAGLFEFGHFLPERITSLQSTRPTINAFLSGVLASAIASPCT CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC APFMGASLGYAVGLPALQALAMFGMIGLGMALPYLAASAVPAVARVLPRPGHWMVTFRQL CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH MAFPMFATVAWLVWVLGQQSGIDGAGALLALLVLMALVLWSLTLKGRARAVFATFSIALA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH AIGVLTVGQTITKPLQASAGPALATSGRWQAWEPGRVDQLTAQGQSVLVDFTAAWCVTCQ HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEEEEEE YNKKTTLANTAVLADIDAKNVALLRADWTRRDPAVTAALTQLGRSGVPVYAIYKPGHAPV CCCCCEEECEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCH ILSEVLSVDDLRTELAKL HHHHHHHHHHHHHHHHCC >Mature Secondary Structure PPSFAHTSTMNFKCSPFAAFFASVLIAVGAISTPSQAQNFQTNILNQGSRNEAGALVTT CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEH EQVRAELLAWAPEGVEAGKPVWLGLQLTHQPEWHTYWKNSGDSGLPTQLTWQLPAGITAG HHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCHHCCCCCCCCCCCEEEEECCCCCCCC EIAWPTPKKIPVGTLANYGYENTVLLPVPLTVAPTFNAAQLNVKLHATWLVCRKECIPQE CCCCCCCCCCCCCHHHCCCCCCEEEEEECEEECCCCCCEEEEEEEEEHHHHHHHHHCCCC GEFTLSLPVKSSTALSGQAFQAAFAATPTALPAGGSQVEVSGKAIKVALSGLPAGLQGKT CCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCE LEFFPETGSVIEPAAPWQQAWQGAVWTAQVPLSGQRTASPAQMPLVVAFNQSAYRIEAPV EEECCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCC KGTWPAVAAAAVVPPALEAALKANASAGAAPVQSSGPPLSLLAALFGALVGGMILNLMPC CCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VFPVLAIKVVSFVHVKDPGTRLSTGLAYTAGVVLSFLALGALLLGLRAAGEQLGWGFQLQ HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC NPAVVAALAALFTLLGLNLAGLFEFGHFLPERITSLQSTRPTINAFLSGVLASAIASPCT CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC APFMGASLGYAVGLPALQALAMFGMIGLGMALPYLAASAVPAVARVLPRPGHWMVTFRQL CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH MAFPMFATVAWLVWVLGQQSGIDGAGALLALLVLMALVLWSLTLKGRARAVFATFSIALA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH AIGVLTVGQTITKPLQASAGPALATSGRWQAWEPGRVDQLTAQGQSVLVDFTAAWCVTCQ HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEEEEEE YNKKTTLANTAVLADIDAKNVALLRADWTRRDPAVTAALTQLGRSGVPVYAIYKPGHAPV CCCCCEEECEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCH ILSEVLSVDDLRTELAKL HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA