| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is sspA [H]
Identifier: 91790014
GI number: 91790014
Start: 4391792
End: 4392469
Strand: Reverse
Name: sspA [H]
Synonym: Bpro_4176
Alternate gene names: 91790014
Gene position: 4392469-4391792 (Counterclockwise)
Preceding gene: 91790015
Following gene: 91790013
Centisome position: 84.47
GC content: 62.98
Gene sequence:
>678_bases ATGGCCTCCCAACTCACATTGATCAGCCACAAGCTGTGCCCTTATGTCCAGCGCGCGGCGATTGTCATGGCCGAGAAGTG CATTAGTTTTGAGCGGCAGGACATTGACCTGGCCCACAAGCCCGACTGGTTCCTCAAGGTCTCGCCGCTGGGCAAGACGC CCGTGCTGCGGGTGGACGGCGAAGCGATTTTTGAATCCGCCGTCATCTGCGAATACCTCGACGAAACAGCCGCACCCCGC CTGCACCCCGAGGGCGCCCTGCAACGTGCCCGGCACCGCAGCTGGATGGAGTTCGGTTCTGCGATCCTCAACACCATCGG CGCCTTCTATAACGCGCCCAGTGAGGAAGCCCTGGCGGCCCGCGCCGCCGAGCTGCGCGCAAAGTTCCAGCTGGTCGAAG CGGCCCTGGGAAGCGGCCCCTACTTCGCTGGCGAACAGTTCAGCATGGTGGATGCGGTCTTCGGCCCGGTCTTCCGGTAC TTCGACGTGTTCGACGAAATCGGTGATTTCGGTGTTTTCGCCGATACGCCCAAGGTGAAGGCCTGGCGGCGCGCGCTGGC ACAACGTGAATCGGTCCGCAACGCGGTTCGTCCTGATTACCCTGAATTTCTGCGCGCCTTTCTGCGGCAACGCGAGTCGG CGCTGTCCCGGCGCATAACTGTCGCGCTGCCAGCTTGA
Upstream 100 bases:
>100_bases CTTCCTGACAGTGGCCTCCGTGGCGCTTTGGCTCGCCGGCGACGGCGCCTTCGCCCTGCGCCGCAGCCTGCGTTTTGTGC CGGCCTTGTGAAGGAGCACC
Downstream 100 bases:
>100_bases GAGCCGGACATTTGCAAGGGAGCGAACTCTTTTTTTCAAGGTTTGCGGATCGGGTGTCGAAATGCAGGTTTGTCGTTCGT CGTAGGGGTGTAAGGTTCAA
Product: glutathione S-transferase-like protein
Products: HX; R-S-glutathione
Alternate protein names: NA
Number of amino acids: Translated: 225; Mature: 224
Protein sequence:
>225_residues MASQLTLISHKLCPYVQRAAIVMAEKCISFERQDIDLAHKPDWFLKVSPLGKTPVLRVDGEAIFESAVICEYLDETAAPR LHPEGALQRARHRSWMEFGSAILNTIGAFYNAPSEEALAARAAELRAKFQLVEAALGSGPYFAGEQFSMVDAVFGPVFRY FDVFDEIGDFGVFADTPKVKAWRRALAQRESVRNAVRPDYPEFLRAFLRQRESALSRRITVALPA
Sequences:
>Translated_225_residues MASQLTLISHKLCPYVQRAAIVMAEKCISFERQDIDLAHKPDWFLKVSPLGKTPVLRVDGEAIFESAVICEYLDETAAPR LHPEGALQRARHRSWMEFGSAILNTIGAFYNAPSEEALAARAAELRAKFQLVEAALGSGPYFAGEQFSMVDAVFGPVFRY FDVFDEIGDFGVFADTPKVKAWRRALAQRESVRNAVRPDYPEFLRAFLRQRESALSRRITVALPA >Mature_224_residues ASQLTLISHKLCPYVQRAAIVMAEKCISFERQDIDLAHKPDWFLKVSPLGKTPVLRVDGEAIFESAVICEYLDETAAPRL HPEGALQRARHRSWMEFGSAILNTIGAFYNAPSEEALAARAAELRAKFQLVEAALGSGPYFAGEQFSMVDAVFGPVFRYF DVFDEIGDFGVFADTPKVKAWRRALAQRESVRNAVRPDYPEFLRAFLRQRESALSRRITVALPA
Specific function: Forms an equimolar complex with the RNA polymerase holoenzyme (RNAP) but not with the core enzyme [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI4758484, Length=218, Percent_Identity=30.2752293577982, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI300360534, Length=212, Percent_Identity=30.6603773584906, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI38016131, Length=192, Percent_Identity=30.2083333333333, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI300360532, Length=216, Percent_Identity=26.8518518518519, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI300360569, Length=188, Percent_Identity=30.3191489361702, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI300360567, Length=188, Percent_Identity=27.6595744680851, Blast_Score=76, Evalue=2e-14, Organism=Escherichia coli, GI1789624, Length=162, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25144449, Length=152, Percent_Identity=31.5789473684211, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI21355763, Length=198, Percent_Identity=31.8181818181818, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24660979, Length=201, Percent_Identity=30.3482587064677, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI21355779, Length=220, Percent_Identity=30, Blast_Score=77, Evalue=7e-15, Organism=Drosophila melanogaster, GI21355775, Length=157, Percent_Identity=33.1210191082803, Blast_Score=74, Evalue=6e-14,
Paralogues:
None
Copy number: 480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1982 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR004045 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]
EC number: 2.5.1.18
Molecular weight: Translated: 25226; Mature: 25095
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASQLTLISHKLCPYVQRAAIVMAEKCISFERQDIDLAHKPDWFLKVSPLGKTPVLRVDG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEECH EAIFESAVICEYLDETAAPRLHPEGALQRARHRSWMEFGSAILNTIGAFYNAPSEEALAA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RAAELRAKFQLVEAALGSGPYFAGEQFSMVDAVFGPVFRYFDVFDEIGDFGVFADTPKVK HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH AWRRALAQRESVRNAVRPDYPEFLRAFLRQRESALSRRITVALPA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCEEEEEECC >Mature Secondary Structure ASQLTLISHKLCPYVQRAAIVMAEKCISFERQDIDLAHKPDWFLKVSPLGKTPVLRVDG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEECH EAIFESAVICEYLDETAAPRLHPEGALQRARHRSWMEFGSAILNTIGAFYNAPSEEALAA HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RAAELRAKFQLVEAALGSGPYFAGEQFSMVDAVFGPVFRYFDVFDEIGDFGVFADTPKVK HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH AWRRALAQRESVRNAVRPDYPEFLRAFLRQRESALSRRITVALPA HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: RX; glutathione
Specific reaction: RX + glutathione = HX + R-S-glutathione
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]