| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is pstS [H]
Identifier: 91790004
GI number: 91790004
Start: 4382181
End: 4383260
Strand: Reverse
Name: pstS [H]
Synonym: Bpro_4166
Alternate gene names: 91790004
Gene position: 4383260-4382181 (Counterclockwise)
Preceding gene: 91790005
Following gene: 91790002
Centisome position: 84.29
GC content: 62.04
Gene sequence:
>1080_bases ATGAAGAAAAATTTATTCGCTATTTTCACGGCCTTCACGGCCGTTTTGTTTTTTGCGCAGGCCGGCGCTGCCTCGGCTGA GACGATTTCCGGCGCCGGATCTTCGGCTGCCGCACCCATCTACCAGGCTTGGGCTCGCGCCTACCAGAAATCGACAGGTG CGGCCCTGGCCTATGAGCCGGTTGGCTCGTCCGCCGGCCTGAAGAAAATTCGTGCCCATGAGACGGGTTTCGGCGCCTCG GACGTCGCGCCCACCGAGGCCGAGCTGGCCGCGAGCGGGCTGCTTGTCTTCCCCGTTGCGATTACCGGCATCTCGCCGGT CGTGAATTTGCCCAAGGTAGGGGACGGCCAGTTGCGATTGACCGGCGAGGTCCTTGCGCGCATCTTTCTGGGCGAGATCA CGCAGTGGAATGCGGCCGAGATCGTGCAGCTGAACCCGGGCCTGAAGCTGCCCGATCTGCCGGTCAAGGTGGTGGTGCGC GGTGACGGCTCCGGAACCACCTACAACTTCGCCGACTATCTGGCCAAGCTGAGCCCCACCTGGAAAGCCAAATACGGGGT CAAGACCAGTGTCGATTGGCCGGCCACCTTTGTGGCGGTCAAGGGCAGCGACGCTGTCGTCAAAAACGTCAGGGAAACGG TTGGCACGATCGGCTATGTGGACCACGGCTACGTCAGGGACCATAAGCTCACGACGGTGCAGCTGAAGAACCTCGACGGC GAGTTTGTCAGCCCGTCCATCGTCGCGTTTCGGGCCGCGCTTTCCAGCAGCGAATGGGCCAGCACCGGATCGTTTACCAG CACGCTGACCAACAAGGCCGGCAAGGCAACATGGCCGATCACCATGGGCACCTTCGCGCTTGTGCCTAAGGTTGCGGACC AGCCCGCCCAAACCCTGCCCGCGCTCAGGTTCTTCGTGTGGGCGTTTCTCAATGGCGACGCACTGGTCCAGGAAAACAAC TTCGTGCGGCTTCCCGATCGTGTGCAGGCCACGGCGTTCAAGGCGATCACGTCCGTAAAGGACAAGGCGGGTAACGCCAT TGCCATGGGGCTGATGACTTCTTCCGGCTCGGCTCGCTAG
Upstream 100 bases:
>100_bases CTTGCAGACACTCAGGGCGCACCGCTAATTTGTTGCAGTGCGTCAAATGCCTGGCCTGGCCCCTTAAACTCCTGATGACG TTTTAATGACACTCTGAAGC
Downstream 100 bases:
>100_bases ACATCATGGTCGCTCGTTAAGGCAAAGGGCGGCTCGTCTTCGGTATCGTGGGTTGCGCACCTGAGTGCGCCGAGCCACAT GCGGCGGGCGCTCAAGCCGC
Product: periplasmic phosphate-binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MKKNLFAIFTAFTAVLFFAQAGAASAETISGAGSSAAAPIYQAWARAYQKSTGAALAYEPVGSSAGLKKIRAHETGFGAS DVAPTEAELAASGLLVFPVAITGISPVVNLPKVGDGQLRLTGEVLARIFLGEITQWNAAEIVQLNPGLKLPDLPVKVVVR GDGSGTTYNFADYLAKLSPTWKAKYGVKTSVDWPATFVAVKGSDAVVKNVRETVGTIGYVDHGYVRDHKLTTVQLKNLDG EFVSPSIVAFRAALSSSEWASTGSFTSTLTNKAGKATWPITMGTFALVPKVADQPAQTLPALRFFVWAFLNGDALVQENN FVRLPDRVQATAFKAITSVKDKAGNAIAMGLMTSSGSAR
Sequences:
>Translated_359_residues MKKNLFAIFTAFTAVLFFAQAGAASAETISGAGSSAAAPIYQAWARAYQKSTGAALAYEPVGSSAGLKKIRAHETGFGAS DVAPTEAELAASGLLVFPVAITGISPVVNLPKVGDGQLRLTGEVLARIFLGEITQWNAAEIVQLNPGLKLPDLPVKVVVR GDGSGTTYNFADYLAKLSPTWKAKYGVKTSVDWPATFVAVKGSDAVVKNVRETVGTIGYVDHGYVRDHKLTTVQLKNLDG EFVSPSIVAFRAALSSSEWASTGSFTSTLTNKAGKATWPITMGTFALVPKVADQPAQTLPALRFFVWAFLNGDALVQENN FVRLPDRVQATAFKAITSVKDKAGNAIAMGLMTSSGSAR >Mature_359_residues MKKNLFAIFTAFTAVLFFAQAGAASAETISGAGSSAAAPIYQAWARAYQKSTGAALAYEPVGSSAGLKKIRAHETGFGAS DVAPTEAELAASGLLVFPVAITGISPVVNLPKVGDGQLRLTGEVLARIFLGEITQWNAAEIVQLNPGLKLPDLPVKVVVR GDGSGTTYNFADYLAKLSPTWKAKYGVKTSVDWPATFVAVKGSDAVVKNVRETVGTIGYVDHGYVRDHKLTTVQLKNLDG EFVSPSIVAFRAALSSSEWASTGSFTSTLTNKAGKATWPITMGTFALVPKVADQPAQTLPALRFFVWAFLNGDALVQENN FVRLPDRVQATAFKAITSVKDKAGNAIAMGLMTSSGSAR
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=338, Percent_Identity=38.4615384615385, Blast_Score=237, Evalue=1e-63,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37796; Mature: 37796
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNLFAIFTAFTAVLFFAQAGAASAETISGAGSSAAAPIYQAWARAYQKSTGAALAYEP CCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC VGSSAGLKKIRAHETGFGASDVAPTEAELAASGLLVFPVAITGISPVVNLPKVGDGQLRL CCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEEEHHHCCCCCCCCCCCCCCCEEE TGEVLARIFLGEITQWNAAEIVQLNPGLKLPDLPVKVVVRGDGSGTTYNFADYLAKLSPT HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHCCCC WKAKYGVKTSVDWPATFVAVKGSDAVVKNVRETVGTIGYVDHGYVRDHKLTTVQLKNLDG CEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEEECCCC EFVSPSIVAFRAALSSSEWASTGSFTSTLTNKAGKATWPITMGTFALVPKVADQPAQTLP CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEECCEEECHHHHCCHHCCCCHHHHH ALRFFVWAFLNGDALVQENNFVRLPDRVQATAFKAITSVKDKAGNAIAMGLMTSSGSAR HHHHHHHHHCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC >Mature Secondary Structure MKKNLFAIFTAFTAVLFFAQAGAASAETISGAGSSAAAPIYQAWARAYQKSTGAALAYEP CCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECC VGSSAGLKKIRAHETGFGASDVAPTEAELAASGLLVFPVAITGISPVVNLPKVGDGQLRL CCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEEEHHHCCCCCCCCCCCCCCCEEE TGEVLARIFLGEITQWNAAEIVQLNPGLKLPDLPVKVVVRGDGSGTTYNFADYLAKLSPT HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHCCCC WKAKYGVKTSVDWPATFVAVKGSDAVVKNVRETVGTIGYVDHGYVRDHKLTTVQLKNLDG CEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEEECCCC EFVSPSIVAFRAALSSSEWASTGSFTSTLTNKAGKATWPITMGTFALVPKVADQPAQTLP CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEECCEEECHHHHCCHHCCCCHHHHH ALRFFVWAFLNGDALVQENNFVRLPDRVQATAFKAITSVKDKAGNAIAMGLMTSSGSAR HHHHHHHHHCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]