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The map label for this gene is ybeY [C]

Identifier: 91789935

GI number: 91789935

Start: 4304888

End: 4305352

Strand: Direct

Name: ybeY [C]

Synonym: Bpro_4096

Alternate gene names: 91789935

Gene position: 4304888-4305352 (Clockwise)

Preceding gene: 91789934

Following gene: 91789939

Centisome position: 82.78

GC content: 64.95

Gene sequence:

>465_bases
ATGGCTCCTGATGTTCCGCTCAGGCAGCTCGACCTTTCCCTGCAGTTCGGCCAGTTCCCCGGCGTCGCCCGGCATCGCGC
CGCCCTGCCGCGCCGCCGCGTGCAGCGCTGGATCAGCCATGCACTGAAAACCGATGCCGAAATCACGGTGCGCATCGTCG
ATGCCGAGGAGGGCCAGTCGCTCAACCGCGACTACCGCCGCAAGGACTACGCCACCAACGTGCTGACCTTTGACTACACC
CGGGAACCCGTGGTGACCGCCGACCTCGTGCTCTGCGCCCCGGTGGTGGAGCGCGAAGCCCGCGAACAGGGCAAAACACT
GGAGGCTCACTACGCCCACCTGCTGGTTCACGCGACGCTGCATGCGCAGGGCTACGACCATGAGACCAACGAGCGCGACG
CACTGGAAATGGAAGCGCTGGAGATCCTGCTGCTGGCTTCGCTGAGATTTGCCAACCCCTATTGA

Upstream 100 bases:

>100_bases
GTGGACGCCTACGACAAACAGCGCACTCCCGAAGTGGCCTCGGTTGACGCTATCGATTCAATAGGCCCCATCAAGCGCCC
TTCGCGGGTCAGGAGCCGAA

Downstream 100 bases:

>100_bases
AGCGGAGGGCCCTGCAACGGCGGCTACTTCACCGGCGGGCTCTTCAGGCGGTAAAGGTGGATCGCATTTTCGCTGGCCAC
CTTGGGCGCCAGGTCTGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MAPDVPLRQLDLSLQFGQFPGVARHRAALPRRRVQRWISHALKTDAEITVRIVDAEEGQSLNRDYRRKDYATNVLTFDYT
REPVVTADLVLCAPVVEREAREQGKTLEAHYAHLLVHATLHAQGYDHETNERDALEMEALEILLLASLRFANPY

Sequences:

>Translated_154_residues
MAPDVPLRQLDLSLQFGQFPGVARHRAALPRRRVQRWISHALKTDAEITVRIVDAEEGQSLNRDYRRKDYATNVLTFDYT
REPVVTADLVLCAPVVEREAREQGKTLEAHYAHLLVHATLHAQGYDHETNERDALEMEALEILLLASLRFANPY
>Mature_153_residues
APDVPLRQLDLSLQFGQFPGVARHRAALPRRRVQRWISHALKTDAEITVRIVDAEEGQSLNRDYRRKDYATNVLTFDYTR
EPVVTADLVLCAPVVEREAREQGKTLEAHYAHLLVHATLHAQGYDHETNERDALEMEALEILLLASLRFANPY

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=156, Percent_Identity=41.025641025641, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_POLSJ (Q124Q3)

Other databases:

- EMBL:   CP000316
- RefSeq:   YP_550887.1
- ProteinModelPortal:   Q124Q3
- SMR:   Q124Q3
- STRING:   Q124Q3
- GeneID:   4013229
- GenomeReviews:   CP000316_GR
- KEGG:   pol:Bpro_4096
- NMPDR:   fig|296591.1.peg.4163
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   RWIRHAL
- PhylomeDB:   Q124Q3
- ProtClustDB:   CLSK2391574
- BioCyc:   PSP296591:BPRO_4096-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17643; Mature: 17512

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPDVPLRQLDLSLQFGQFPGVARHRAALPRRRVQRWISHALKTDAEITVRIVDAEEGQS
CCCCCCHHHHEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
LNRDYRRKDYATNVLTFDYTREPVVTADLVLCAPVVEREAREQGKTLEAHYAHLLVHATL
CCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
HAQGYDHETNERDALEMEALEILLLASLRFANPY
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
APDVPLRQLDLSLQFGQFPGVARHRAALPRRRVQRWISHALKTDAEITVRIVDAEEGQS
CCCCCHHHHEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
LNRDYRRKDYATNVLTFDYTREPVVTADLVLCAPVVEREAREQGKTLEAHYAHLLVHATL
CCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
HAQGYDHETNERDALEMEALEILLLASLRFANPY
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA