Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is livJ [C]

Identifier: 91789899

GI number: 91789899

Start: 4267526

End: 4268680

Strand: Reverse

Name: livJ [C]

Synonym: Bpro_4060

Alternate gene names: 91789899

Gene position: 4268680-4267526 (Counterclockwise)

Preceding gene: 91789900

Following gene: 91789898

Centisome position: 82.09

GC content: 61.65

Gene sequence:

>1155_bases
ATGAACATGATGTCGCGAGTGGTCCGGTGGAACTGGGTGATGTTTGTCCTGGCCCTGGCCGCCGTGTTGCCTGTCCGCGC
CGAGCCTGGCGTGAGCGACACGGCCATTGCGGTCGGGCAATCGGCGGTATTTAGCGGGCCGGTTGCCGCGACCGGGAACA
ACTACCGGCGCGGTATCGAACTCTACTTCGAGCAGGCGAACAAGGCCGGTGGCGTGCACGGGCGCAAACTGCAGCTGACA
GCGCTGGACGACGCCTACGATCCCAAACGCACGGTCGAAAACACCAAGCTTCTCATCGAGCAAAACAAGGTGTTTGCGCT
GATCGGCTATGTGGCCACGGCCAATTTGATTGCGGCCATGCCGCTCGCCGAGGAGGCCAAGGTTCCGATGTTCGCGCCCC
TGGTGGGCACGACTTCCATCCGGCTCAAGCACAACCACTATCTTTTTCACGTGAGGGCGAGCTACAAAACCGAACTGGCC
CGGATTACCCAGCAGCTGGCAGTGGTCGGCAACGACAAGGTGGCCGTGGTTTACCAGGACAGCGTTTTCGGCAAGTCCAA
CCTGGACACCCTGCTCGAGCTCATCAAGGCCGAGAAGCTACAGGTCGTCAAAACAATTCCCATGGCCATTGCCGCGACGA
GTGCCGCCGACATTGCAGCGCAGATCAAGGAAGCGTCGCCCAACGTCATCATCATGATCATGGCCGGCACAATGACGGAA
GTGCTGATCAGGGATGTGCGTGCCGCCGGTTTGGGCGCACCGCTTTACACCATCTCGGTTGGCCTGGCGGACGCCAAGGC
CTCGGCCGCCCGCTTGAACGGCGCCTTGCGCGGCGTCATCACGGCCAGCATCGTCCCGTCGCCGACACTGGAGCGTTACG
GCGTCGTCAAGGAGTACCGCAAGGCGCTGGGCACGTCGGCGGGGTCGGGCGACAACTACACCGTGCTTGAAGGTTATATT
GCGGCCAAGGCTTTCGTCGAAGGGCTGCGCCGCGCGGGGCGCGCTCTGACCCGGGAACACTTTATAGCGGCGCTGGAAGG
ATTCGGCAATCTGGATCTGGGCGACTTCCGGGTCGACTACAGCCCGAAAAACCACAACGGCTCCAGCTTCGTGGAGCTTG
AGATGTACACCGCAGCAGGCACTTTGATTCGATGA

Upstream 100 bases:

>100_bases
CGTGGTGCAGGACCCCGTGGCCGTGGCCCCCAAAAAACAGTTCTTCAACGCGCGGGCCAATCACTGCGTGAACATTGGTT
AAAACAAAAAGGTAAACCTC

Downstream 100 bases:

>100_bases
CATCCAGGGTCGTGACTCTCGGCGTTAACCAGGTGAGGCGCACGCTGGCTGTTTCAGCGCAGGTTTCCCTGCTTGAAGTG
CTGCGCAACGACCTGGAACT

Product: extracellular ligand-binding receptor

Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIELYFEQANKAGGVHGRKLQLT
ALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAMPLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELA
RITQQLAVVGNDKVAVVYQDSVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE
VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYRKALGTSAGSGDNYTVLEGYI
AAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDYSPKNHNGSSFVELEMYTAAGTLIR

Sequences:

>Translated_384_residues
MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIELYFEQANKAGGVHGRKLQLT
ALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAMPLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELA
RITQQLAVVGNDKVAVVYQDSVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE
VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYRKALGTSAGSGDNYTVLEGYI
AAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDYSPKNHNGSSFVELEMYTAAGTLIR
>Mature_384_residues
MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIELYFEQANKAGGVHGRKLQLT
ALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAMPLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELA
RITQQLAVVGNDKVAVVYQDSVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE
VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYRKALGTSAGSGDNYTVLEGYI
AAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDYSPKNHNGSSFVELEMYTAAGTLIR

Specific function: Component of an amino-acid transport system (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the leucine-binding protein family [H]

Homologues:

None

Paralogues:

None

Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001828 [H]

Pfam domain/function: PF01094 ANF_receptor [H]

EC number: NA

Molecular weight: Translated: 41257; Mature: 41257

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCHHCCCCEEECCCCCHHHHH
LYFEQANKAGGVHGRKLQLTALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAM
HHEEHHCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCEEEEHHHHHHHHHHHHC
PLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELARITQQLAVVGNDKVAVVYQD
CCCCCCCCCEEEEECCCEEEEEEECEEEEEEECCHHHHHHHHHHHHHEECCCEEEEEEEC
SVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCHHHH
VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYR
HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHH
KALGTSAGSGDNYTVLEGYIAAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDY
HHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
SPKNHNGSSFVELEMYTAAGTLIR
CCCCCCCCEEEEEEEEECCCCCCC
>Mature Secondary Structure
MNMMSRVVRWNWVMFVLALAAVLPVRAEPGVSDTAIAVGQSAVFSGPVAATGNNYRRGIE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCHHCCCCEEECCCCCHHHHH
LYFEQANKAGGVHGRKLQLTALDDAYDPKRTVENTKLLIEQNKVFALIGYVATANLIAAM
HHEEHHCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCEEEEHHHHHHHHHHHHC
PLAEEAKVPMFAPLVGTTSIRLKHNHYLFHVRASYKTELARITQQLAVVGNDKVAVVYQD
CCCCCCCCCEEEEECCCEEEEEEECEEEEEEECCHHHHHHHHHHHHHEECCCEEEEEEEC
SVFGKSNLDTLLELIKAEKLQVVKTIPMAIAATSAADIAAQIKEASPNVIIMIMAGTMTE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCHHHH
VLIRDVRAAGLGAPLYTISVGLADAKASAARLNGALRGVITASIVPSPTLERYGVVKEYR
HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHH
KALGTSAGSGDNYTVLEGYIAAKAFVEGLRRAGRALTREHFIAALEGFGNLDLGDFRVDY
HHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
SPKNHNGSSFVELEMYTAAGTLIR
CCCCCCCCEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]

Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA