| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is solR [H]
Identifier: 91789884
GI number: 91789884
Start: 4246278
End: 4246904
Strand: Reverse
Name: solR [H]
Synonym: Bpro_4045
Alternate gene names: 91789884
Gene position: 4246904-4246278 (Counterclockwise)
Preceding gene: 91789887
Following gene: 91789883
Centisome position: 81.67
GC content: 66.67
Gene sequence:
>627_bases GTGATCAGCGACTGGCTGTGTGCCCTGCGCGAGTTTTCGGTGGAAGCCCTGATGGTGCTGGGCCCGGATCCCTTTGGCGG CCAGGAGGACCGGCTGGTACTGGCCTTGCACCCGCCGCGCCTGCTGGATGCGGCCGAGGCGCTGGCGGAGAGCCGGGACT TCGGCGCCCCATGGCGTGATTCGGATGCCCCGCTCGTGGCCTGGCAGGATATTTCAAGGTCCGCCTTCGAAAACCTGGGC CGCTGGCGCAGGCTCTGGCTGGGCCACGGCTACCAGAGCGTCGTGCGCATCGCGTTTCCGCTGACCGTGGGGCGCGCCTT CGAATGCTATCTTTTCAGCCCGCGCCAGTGGCATGACCGCAGCGAGGCGGCGCTGCTGGCCTGGTCGGCACTCAATATCT GGCCCTTGCTCAAGCGCGTCCTGGCCGAAGCGCGCAGCCCGCTGAGCCCGCGCGAGCTGGAATGCCTGAGCCTGGCTTTT CAGGGCAGGACGGCGCGCGAAAGCGGCGACATCCTCGTTTGCAGCGAGCGCACCGTGAACTTTCACCTCTCCAATGCCAT GGCCAAGCTCAAGGTCGACAACAAGCTGGCGGCCATTCAGCGCGCCTGCTGGTTTGGCCTGATCTGA
Upstream 100 bases:
>100_bases GACCAGGAATGCGTTTGGCATTTGCCTGTATTGTCCCTGTTTTGTTTTAGGCGAGCGAATGCAACTACCTGCTAACTTTG ACAGTGTCAGCCTGGACGGT
Downstream 100 bases:
>100_bases GAGGCTGAGAATCTTTTGTTCATACCCGCTTATCACGCCAAAACGCACCCACTCGTTGTTGCAAATGCGCGCCATAGCCC GAGCTATGGCTGTGCTTTGC
Product: LuxR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MISDWLCALREFSVEALMVLGPDPFGGQEDRLVLALHPPRLLDAAEALAESRDFGAPWRDSDAPLVAWQDISRSAFENLG RWRRLWLGHGYQSVVRIAFPLTVGRAFECYLFSPRQWHDRSEAALLAWSALNIWPLLKRVLAEARSPLSPRELECLSLAF QGRTARESGDILVCSERTVNFHLSNAMAKLKVDNKLAAIQRACWFGLI
Sequences:
>Translated_208_residues MISDWLCALREFSVEALMVLGPDPFGGQEDRLVLALHPPRLLDAAEALAESRDFGAPWRDSDAPLVAWQDISRSAFENLG RWRRLWLGHGYQSVVRIAFPLTVGRAFECYLFSPRQWHDRSEAALLAWSALNIWPLLKRVLAEARSPLSPRELECLSLAF QGRTARESGDILVCSERTVNFHLSNAMAKLKVDNKLAAIQRACWFGLI >Mature_208_residues MISDWLCALREFSVEALMVLGPDPFGGQEDRLVLALHPPRLLDAAEALAESRDFGAPWRDSDAPLVAWQDISRSAFENLG RWRRLWLGHGYQSVVRIAFPLTVGRAFECYLFSPRQWHDRSEAALLAWSALNIWPLLKRVLAEARSPLSPRELECLSLAF QGRTARESGDILVCSERTVNFHLSNAMAKLKVDNKLAAIQRACWFGLI
Specific function: Unknown
COG id: COG2771
COG function: function code K; DNA-binding HTH domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016032 - InterPro: IPR005143 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 23501; Mature: 23501
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISDWLCALREFSVEALMVLGPDPFGGQEDRLVLALHPPRLLDAAEALAESRDFGAPWRD CCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCC SDAPLVAWQDISRSAFENLGRWRRLWLGHGYQSVVRIAFPLTVGRAFECYLFSPRQWHDR CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCHHHCCC SEAALLAWSALNIWPLLKRVLAEARSPLSPRELECLSLAFQGRTARESGDILVCSERTVN CCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCEEE FHLSNAMAKLKVDNKLAAIQRACWFGLI EEECCCEEEEEECHHHHHHHHHHHHCCC >Mature Secondary Structure MISDWLCALREFSVEALMVLGPDPFGGQEDRLVLALHPPRLLDAAEALAESRDFGAPWRD CCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCC SDAPLVAWQDISRSAFENLGRWRRLWLGHGYQSVVRIAFPLTVGRAFECYLFSPRQWHDR CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCHHHCCC SEAALLAWSALNIWPLLKRVLAEARSPLSPRELECLSLAFQGRTARESGDILVCSERTVN CCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCEEE FHLSNAMAKLKVDNKLAAIQRACWFGLI EEECCCEEEEEECHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371457 [H]