| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789868
Identifier: 91789868
GI number: 91789868
Start: 4227654
End: 4229216
Strand: Reverse
Name: 91789868
Synonym: Bpro_4028
Alternate gene names: NA
Gene position: 4229216-4227654 (Counterclockwise)
Preceding gene: 91789869
Following gene: 91789867
Centisome position: 81.33
GC content: 62.51
Gene sequence:
>1563_bases ATGCCCCAGAATCACAGCCTTCACCCGCCAGCCGTCACGCTGCGCAACACTTCATTGAGCCAATGGCTGCTGGGCGTGGG GCTGGCGTCGCTGCTGCTCAGGCTCTGGATTTCCGCGACATTCCCGATCAGCGGTGACGAGGCTTTCTTCTACTGGTGGG GTGTCTATCCCAACTGGGGCTACTCTGACCATCCGCCCATGGTCGGATGGCTGATTGCCCTGATGCGTGCCACATTCGGC GACAGTCTGTGGTCGATTCGCCTGCCGGTGGTCCTGCTGCCGCTGGGTGTGGGCGCCGCGCTCTGGTGGGCGCTCAAGCC TCTTGACCGGGAGCGCGCGGCCTGGGCCGTGCTGCTGTTCTGGCTGGCGCCGCTGAACTGGCTCAACGCCCTGATCACCA CCGACACGCCGCTGATTTTCTGGTCGGCGCTGTCGGTGGCCGCCTTGCTGCGCGCCGAGCGGCGCGAGCAGCTCGACCGG GCGGCCTACGGCCTGTATGCGCTGTCGGGCCTGTTTCTGGGCTGTGCGTTTTTGTCGAAGTATTTCTCGGTGGTGCTGGG TCTGACCTACCTCGTGTACTTTGTGGGCTACCGCCGCCAGCGGCTCGCGGGCTTTGCCCTGCTGATACTTTGCGCCTTGC CCGGGCCCGCCATCAACATCGCGTTCAACATGTCGCACGGCTGGCCGAACATCATGTTCAACGTGTACAACCGCAACGAA GAGGCCTCGTTCGAGTGGCGCAAGCCCCTGCTGTATGTGGTCACGCTGGCCTACCTGATCACGCCGGTGGCGGTGTGGCT GGGCTTCAAATACCGCAAGACGCTGGCGGCCACTGCAGCTTCGACGACGGCCCAGCGCCTGCTGGCCTGCCTGGTGGTGG TGCCCCTGCTGTTTTTTGCGCTGCTGTCGGCCAAGAAAGTGATCGGCCTGCACTGGGTGCTGTCGTTCTACCCCTTCGGT TTTGCGTTCCTGGCGTTTGCCTTGCCGGCCGACAAACTCAAGACCTGCGCCAAAGGCCTGGCCGTGTTTGCCGGCCTGCA TGTGCTGGTGGTGGCGGGCCTGTACATGACCACGCTGGACACCTGGCGCAGCACGAAGATTTACCCGCAAATCATCCGCG GCTATAAAACCGCCGACATCCTGCGGCAAGTCAGCAGCCCGGGCGTGGTGCTGATGGGCGATGCCTTCACGCCCGCCTCG ATTTACGGCTTTGAGCGCCGCCAGTACATGCCGGTGTTTGGCACGGGAAAGTTTCACTCCCGGCAGGACGATCAGCTGGT TGATTTTTCGGTCTACCAGGGCAATACCATACGCGTCATCACGTTCGGCAGCCCCAGGCTGGAGGACTTCCAGCCCTATT TTGAATCGGTGCGTGTGCTCAGCTTCACCCAGAATGGCGTGCCGTTTTATGCGGTGGAGGGCGCCGGGTTCAAGTACCAG GCCTTCCGCGAAGGGATGCTGGGGACTATTTTCAAGCGCTACTACAACATACCCTCCGCATTGCCGATGACCGGGTGCCC GTTTTGCGAACGCTATTGCGGGAAGGTGCGATGTCCGAGGTAG
Upstream 100 bases:
>100_bases TAAAACCTGCCGGCGGCCCCAGCTTGCGCCCATCGCGCCCTTTACGTTCCTTGCGCCCTTTGCGCCCCTTCAGTCCTTTG CGTCATTGAATCAGCCTTCC
Downstream 100 bases:
>100_bases CCGGCCCCGTTGTCGCCGCGTTTGACTTCGACGGCACGCTGACCCGGCGTGACACCCTGCTGCCGTTTCTTGCCCGTGGC CTGGGCTGGCCGGGGTTTTT
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: Glycosyl Transferase Family; Glycosyltransferase
Number of amino acids: Translated: 520; Mature: 519
Protein sequence:
>520_residues MPQNHSLHPPAVTLRNTSLSQWLLGVGLASLLLRLWISATFPISGDEAFFYWWGVYPNWGYSDHPPMVGWLIALMRATFG DSLWSIRLPVVLLPLGVGAALWWALKPLDRERAAWAVLLFWLAPLNWLNALITTDTPLIFWSALSVAALLRAERREQLDR AAYGLYALSGLFLGCAFLSKYFSVVLGLTYLVYFVGYRRQRLAGFALLILCALPGPAINIAFNMSHGWPNIMFNVYNRNE EASFEWRKPLLYVVTLAYLITPVAVWLGFKYRKTLAATAASTTAQRLLACLVVVPLLFFALLSAKKVIGLHWVLSFYPFG FAFLAFALPADKLKTCAKGLAVFAGLHVLVVAGLYMTTLDTWRSTKIYPQIIRGYKTADILRQVSSPGVVLMGDAFTPAS IYGFERRQYMPVFGTGKFHSRQDDQLVDFSVYQGNTIRVITFGSPRLEDFQPYFESVRVLSFTQNGVPFYAVEGAGFKYQ AFREGMLGTIFKRYYNIPSALPMTGCPFCERYCGKVRCPR
Sequences:
>Translated_520_residues MPQNHSLHPPAVTLRNTSLSQWLLGVGLASLLLRLWISATFPISGDEAFFYWWGVYPNWGYSDHPPMVGWLIALMRATFG DSLWSIRLPVVLLPLGVGAALWWALKPLDRERAAWAVLLFWLAPLNWLNALITTDTPLIFWSALSVAALLRAERREQLDR AAYGLYALSGLFLGCAFLSKYFSVVLGLTYLVYFVGYRRQRLAGFALLILCALPGPAINIAFNMSHGWPNIMFNVYNRNE EASFEWRKPLLYVVTLAYLITPVAVWLGFKYRKTLAATAASTTAQRLLACLVVVPLLFFALLSAKKVIGLHWVLSFYPFG FAFLAFALPADKLKTCAKGLAVFAGLHVLVVAGLYMTTLDTWRSTKIYPQIIRGYKTADILRQVSSPGVVLMGDAFTPAS IYGFERRQYMPVFGTGKFHSRQDDQLVDFSVYQGNTIRVITFGSPRLEDFQPYFESVRVLSFTQNGVPFYAVEGAGFKYQ AFREGMLGTIFKRYYNIPSALPMTGCPFCERYCGKVRCPR >Mature_519_residues PQNHSLHPPAVTLRNTSLSQWLLGVGLASLLLRLWISATFPISGDEAFFYWWGVYPNWGYSDHPPMVGWLIALMRATFGD SLWSIRLPVVLLPLGVGAALWWALKPLDRERAAWAVLLFWLAPLNWLNALITTDTPLIFWSALSVAALLRAERREQLDRA AYGLYALSGLFLGCAFLSKYFSVVLGLTYLVYFVGYRRQRLAGFALLILCALPGPAINIAFNMSHGWPNIMFNVYNRNEE ASFEWRKPLLYVVTLAYLITPVAVWLGFKYRKTLAATAASTTAQRLLACLVVVPLLFFALLSAKKVIGLHWVLSFYPFGF AFLAFALPADKLKTCAKGLAVFAGLHVLVVAGLYMTTLDTWRSTKIYPQIIRGYKTADILRQVSSPGVVLMGDAFTPASI YGFERRQYMPVFGTGKFHSRQDDQLVDFSVYQGNTIRVITFGSPRLEDFQPYFESVRVLSFTQNGVPFYAVEGAGFKYQA FREGMLGTIFKRYYNIPSALPMTGCPFCERYCGKVRCPR
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58546; Mature: 58415
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: PS00068 MDH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQNHSLHPPAVTLRNTSLSQWLLGVGLASLLLRLWISATFPISGDEAFFYWWGVYPNWG CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC YSDHPPMVGWLIALMRATFGDSLWSIRLPVVLLPLGVGAALWWALKPLDRERAAWAVLLF CCCCCCHHHHHHHHHHHHHCCCHHEEECCHHEEEHHHHHHHHHHHCCCCHHHHHHHHHHH WLAPLNWLNALITTDTPLIFWSALSVAALLRAERREQLDRAAYGLYALSGLFLGCAFLSK HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFSVVLGLTYLVYFVGYRRQRLAGFALLILCALPGPAINIAFNMSHGWPNIMFNVYNRNE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCC EASFEWRKPLLYVVTLAYLITPVAVWLGFKYRKTLAATAASTTAQRLLACLVVVPLLFFA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLSAKKVIGLHWVLSFYPFGFAFLAFALPADKLKTCAKGLAVFAGLHVLVVAGLYMTTLD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TWRSTKIYPQIIRGYKTADILRQVSSPGVVLMGDAFTPASIYGFERRQYMPVFGTGKFHS HHCCCCCCHHHHCCCHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCEECCEECCCCCCC RQDDQLVDFSVYQGNTIRVITFGSPRLEDFQPYFESVRVLSFTQNGVPFYAVEGAGFKYQ CCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHEEEEEECCCCCEEEECCCCCCHH AFREGMLGTIFKRYYNIPSALPMTGCPFCERYCGKVRCPR HHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCC >Mature Secondary Structure PQNHSLHPPAVTLRNTSLSQWLLGVGLASLLLRLWISATFPISGDEAFFYWWGVYPNWG CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC YSDHPPMVGWLIALMRATFGDSLWSIRLPVVLLPLGVGAALWWALKPLDRERAAWAVLLF CCCCCCHHHHHHHHHHHHHCCCHHEEECCHHEEEHHHHHHHHHHHCCCCHHHHHHHHHHH WLAPLNWLNALITTDTPLIFWSALSVAALLRAERREQLDRAAYGLYALSGLFLGCAFLSK HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFSVVLGLTYLVYFVGYRRQRLAGFALLILCALPGPAINIAFNMSHGWPNIMFNVYNRNE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEECCCC EASFEWRKPLLYVVTLAYLITPVAVWLGFKYRKTLAATAASTTAQRLLACLVVVPLLFFA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLSAKKVIGLHWVLSFYPFGFAFLAFALPADKLKTCAKGLAVFAGLHVLVVAGLYMTTLD HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TWRSTKIYPQIIRGYKTADILRQVSSPGVVLMGDAFTPASIYGFERRQYMPVFGTGKFHS HHCCCCCCHHHHCCCHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCEECCEECCCCCCC RQDDQLVDFSVYQGNTIRVITFGSPRLEDFQPYFESVRVLSFTQNGVPFYAVEGAGFKYQ CCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHEEEEEECCCCCEEEECCCCCCHH AFREGMLGTIFKRYYNIPSALPMTGCPFCERYCGKVRCPR HHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA