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The map label for this gene is yrkH [H]

Identifier: 91789775

GI number: 91789775

Start: 4125809

End: 4126564

Strand: Reverse

Name: yrkH [H]

Synonym: Bpro_3935

Alternate gene names: 91789775

Gene position: 4126564-4125809 (Counterclockwise)

Preceding gene: 91789776

Following gene: 91789774

Centisome position: 79.35

GC content: 64.29

Gene sequence:

>756_bases
ATGTTCTTTAGACAACGAGCGGCGGAGAGCGCCACCCTCTCTTATTTCTTTGGATGCGCGAGCCTGGCAAAGGCGGTAGC
CGTTGACGTGGTCGCTGGCGACGAGGACTGGTTCATCGCCGAGGCCGAGAAGGCAGGCGTCAGGATTGCTCACGTCATCG
ACACCCATGTTCATGCCGACCACTACTCGGGTGGCCCCGCGCTGGCACGGCGGGTCGGCGCGCCGTATTACCTGCACGAG
AGCAACAAGGGACGGGTCATGTTCGAATTCGCGCCCGTCAAGGACGGCCAGCGCCTCGAGGCTGGCAACGTGGTGGTCGA
CATTCTGCATACCCCGGGGCACACGCCAGACAGCATCTGTCTGCTGGTACGAGACCTGCGCCGGGGCGACGAGCCCTGGT
TCGTCATCACCGGCGACACCTTGTTCGTTGGCGCCGCAGGACGACCGGATTTGGCGGGCCGCGAGCGGGAGATGGCGGGT
CAACTGCACGATACCTTGCATGCCAAGCTGCTGACCCTGCCTGCCGACCTCGAAATCTTTCCTGGTCACCAGGCCGGCAG
CGCCTGCGGTGTCGGCCTGTCTGGCAAGCCCTCATCGACCATCGGTTTTGAGAGGCGCTTCAACCCCATGCTCTCGATGT
CTCGCGAAGCATTCGTCAAGGCGCTCACGGCCGACATTCCGCCGCAGCCTCAGGACATGGCCCGCATCGTAGAGGCCAAC
CTGCATGGCAGGGCACCGGAGCCGGCGCACGCCTGA

Upstream 100 bases:

>100_bases
CATCCAGGGCTCGCATCGCAGCAGCCTGGACGAACTCACCCAATGGACTACCTGGGCCGACAAGGTCCTGGTGTTCTGAT
TCAGGATTCAGGAGACAGAC

Downstream 100 bases:

>100_bases
GCTGACCGCAGATGAAATACGGCATCCGCGCCAATCTGACCCAAGTCCTGCAGCAACTGCTGCAGGTACTGCTCGTGGGC
ATGACCATAGGGATGATGCG

Product: beta-lactamase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MFFRQRAAESATLSYFFGCASLAKAVAVDVVAGDEDWFIAEAEKAGVRIAHVIDTHVHADHYSGGPALARRVGAPYYLHE
SNKGRVMFEFAPVKDGQRLEAGNVVVDILHTPGHTPDSICLLVRDLRRGDEPWFVITGDTLFVGAAGRPDLAGREREMAG
QLHDTLHAKLLTLPADLEIFPGHQAGSACGVGLSGKPSSTIGFERRFNPMLSMSREAFVKALTADIPPQPQDMARIVEAN
LHGRAPEPAHA

Sequences:

>Translated_251_residues
MFFRQRAAESATLSYFFGCASLAKAVAVDVVAGDEDWFIAEAEKAGVRIAHVIDTHVHADHYSGGPALARRVGAPYYLHE
SNKGRVMFEFAPVKDGQRLEAGNVVVDILHTPGHTPDSICLLVRDLRRGDEPWFVITGDTLFVGAAGRPDLAGREREMAG
QLHDTLHAKLLTLPADLEIFPGHQAGSACGVGLSGKPSSTIGFERRFNPMLSMSREAFVKALTADIPPQPQDMARIVEAN
LHGRAPEPAHA
>Mature_251_residues
MFFRQRAAESATLSYFFGCASLAKAVAVDVVAGDEDWFIAEAEKAGVRIAHVIDTHVHADHYSGGPALARRVGAPYYLHE
SNKGRVMFEFAPVKDGQRLEAGNVVVDILHTPGHTPDSICLLVRDLRRGDEPWFVITGDTLFVGAAGRPDLAGREREMAG
QLHDTLHAKLLTLPADLEIFPGHQAGSACGVGLSGKPSSTIGFERRFNPMLSMSREAFVKALTADIPPQPQDMARIVEAN
LHGRAPEPAHA

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Homo sapiens, GI41327741, Length=251, Percent_Identity=27.4900398406374, Blast_Score=93, Evalue=2e-19,
Organism=Escherichia coli, GI1787158, Length=212, Percent_Identity=29.2452830188679, Blast_Score=76, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538952, Length=241, Percent_Identity=28.2157676348548, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17536925, Length=161, Percent_Identity=31.6770186335404, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324614, Length=183, Percent_Identity=31.1475409836066, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221330176, Length=241, Percent_Identity=28.6307053941909, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 27141; Mature: 27141

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFRQRAAESATLSYFFGCASLAKAVAVDVVAGDEDWFIAEAEKAGVRIAHVIDTHVHAD
CCCHHHHCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCEEEEEEEECCEECC
HYSGGPALARRVGAPYYLHESNKGRVMFEFAPVKDGQRLEAGNVVVDILHTPGHTPDSIC
CCCCCHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEEECCCEEEEEEECCCCCHHHHH
LLVRDLRRGDEPWFVITGDTLFVGAAGRPDLAGREREMAGQLHDTLHAKLLTLPADLEIF
HHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCEEE
PGHQAGSACGVGLSGKPSSTIGFERRFNPMLSMSREAFVKALTADIPPQPQDMARIVEAN
CCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LHGRAPEPAHA
CCCCCCCCCCC
>Mature Secondary Structure
MFFRQRAAESATLSYFFGCASLAKAVAVDVVAGDEDWFIAEAEKAGVRIAHVIDTHVHAD
CCCHHHHCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEECCCCCEEEEEEEECCEECC
HYSGGPALARRVGAPYYLHESNKGRVMFEFAPVKDGQRLEAGNVVVDILHTPGHTPDSIC
CCCCCHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEEECCCEEEEEEECCCCCHHHHH
LLVRDLRRGDEPWFVITGDTLFVGAAGRPDLAGREREMAGQLHDTLHAKLLTLPADLEIF
HHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCEEE
PGHQAGSACGVGLSGKPSSTIGFERRFNPMLSMSREAFVKALTADIPPQPQDMARIVEAN
CCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
LHGRAPEPAHA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]