Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91789750

Identifier: 91789750

GI number: 91789750

Start: 4103505

End: 4104089

Strand: Direct

Name: 91789750

Synonym: Bpro_3908

Alternate gene names: NA

Gene position: 4103505-4104089 (Clockwise)

Preceding gene: 91789749

Following gene: 91789752

Centisome position: 78.91

GC content: 63.76

Gene sequence:

>585_bases
ATGACCCAAGCTGTCGGGGCCATGGCGGTCCTCGCCTGCCGGAACAGGAAATGCTGGACGAACTGGCTGGCCAGACACCA
CGCCAGCAGCCCGGGTGTCTGGCTGCAGATCGCCAAGAAGGATTCGGGCCTGGCGTCCATCTCCCACGCCGAAGCGCTGG
AAGCGGCCTTGTGCCAGGGCTGGATAGACGGCCAGCGCAAAAGCCTGGACGCGCAATACTTCCTGCAGAAATTCACGCCG
CGCCGGACCAGGAGCATCTGGTCCAAAATCAACCGTGAGAAGGCATTGGCGCTGCTGGCTGCCGGGCACATGCAAGCCGC
CGGCCTGGCCGAGATCGAACGCGCCAAGGCCGATGGCCGCTGGGATGCGGCCTACGACGGGCAGGCAAAGGTGACCGTCC
CTGAAGACCTGGCGGCCCTGCTGGCCAGGGAGCCCCAGGCGAAAGCCTTTTTTGAATCCCTCGACTCACGCAACCGCTAC
GCCATCCTGTTTCGGCTCCAGACGGCGAAAAAGCAGGAGACCCGGGAGCGTCGCCTCCTGCAATTCACAGGGATGCTGAG
CCGCGGAGAGAAAATTTATCCCTGA

Upstream 100 bases:

>100_bases
GGTCACCGAGGCCAGCCTGACCTATGTGGCGATCGACGATTTCGGCAAGCCGCGCAAGATTGCCAGCACCTGACCTCCTG
CCCACGCAAAAAATGACACC

Downstream 100 bases:

>100_bases
ACGGGGCCCACGCCGGCCTGCAGCGAAGGCCTCAGAGGCTGAGAGTTTTTCGAAGCGACGGCATTTCCTCCCTCGCCCCT
TTGGGGAGAGGGTTGGGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MTQAVGAMAVLACRNRKCWTNWLARHHASSPGVWLQIAKKDSGLASISHAEALEAALCQGWIDGQRKSLDAQYFLQKFTP
RRTRSIWSKINREKALALLAAGHMQAAGLAEIERAKADGRWDAAYDGQAKVTVPEDLAALLAREPQAKAFFESLDSRNRY
AILFRLQTAKKQETRERRLLQFTGMLSRGEKIYP

Sequences:

>Translated_194_residues
MTQAVGAMAVLACRNRKCWTNWLARHHASSPGVWLQIAKKDSGLASISHAEALEAALCQGWIDGQRKSLDAQYFLQKFTP
RRTRSIWSKINREKALALLAAGHMQAAGLAEIERAKADGRWDAAYDGQAKVTVPEDLAALLAREPQAKAFFESLDSRNRY
AILFRLQTAKKQETRERRLLQFTGMLSRGEKIYP
>Mature_193_residues
TQAVGAMAVLACRNRKCWTNWLARHHASSPGVWLQIAKKDSGLASISHAEALEAALCQGWIDGQRKSLDAQYFLQKFTPR
RTRSIWSKINREKALALLAAGHMQAAGLAEIERAKADGRWDAAYDGQAKVTVPEDLAALLAREPQAKAFFESLDSRNRYA
ILFRLQTAKKQETRERRLLQFTGMLSRGEKIYP

Specific function: Unknown

COG id: COG4430

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21798; Mature: 21667

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQAVGAMAVLACRNRKCWTNWLARHHASSPGVWLQIAKKDSGLASISHAEALEAALCQG
CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
WIDGQRKSLDAQYFLQKFTPRRTRSIWSKINREKALALLAAGHMQAAGLAEIERAKADGR
HHCCHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
WDAAYDGQAKVTVPEDLAALLAREPQAKAFFESLDSRNRYAILFRLQTAKKQETRERRLL
CCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHH
QFTGMLSRGEKIYP
HHHHHHHCCCCCCC
>Mature Secondary Structure 
TQAVGAMAVLACRNRKCWTNWLARHHASSPGVWLQIAKKDSGLASISHAEALEAALCQG
CCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
WIDGQRKSLDAQYFLQKFTPRRTRSIWSKINREKALALLAAGHMQAAGLAEIERAKADGR
HHCCHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
WDAAYDGQAKVTVPEDLAALLAREPQAKAFFESLDSRNRYAILFRLQTAKKQETRERRLL
CCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHH
QFTGMLSRGEKIYP
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA