| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yurO [H]
Identifier: 91789659
GI number: 91789659
Start: 4003975
End: 4005297
Strand: Direct
Name: yurO [H]
Synonym: Bpro_3815
Alternate gene names: 91789659
Gene position: 4003975-4005297 (Clockwise)
Preceding gene: 91789658
Following gene: 91789660
Centisome position: 77.0
GC content: 60.39
Gene sequence:
>1323_bases ATGCCTTTGCCCAGATTCCTTCCTTCCGCAGTTTTCGTCCAGCGCTTCGTGCCTGCTCTGGCTGGCGCGCTGGCTTGCGC CGCCCTGGCTGGCCCTGTGCTGGCCCAGACCTCGCAGCAAACCATCACCATGTGGAGTCATTGGCCCGACGAGCAGTCCA AGCGCGGCTTTGTCGAAGAGCGCGTGAAAAAGTTCGAGGCCGCCACACCGCAATGCAAAGTCAATCTTCAATTCGTCCAG AAGTCCGACCTCTATGCGTCGGTCAAGACCTCGGTGCGAACGGGGCAGGCACCCGACATCTTCTGGCTTGAGCCCGACGA AATTGCCTTCGCGAAGAGCGGTTACCTGGAGCCGCTGGACGGCCACATCAACCTCAACAACCTGGAAGACTGGGCACGCC AGTCCTGGAGCCATAACGGCAAGGTCTACGGACTGCCGGTGGAGGCCTACACGGTGGAGCTGTACTACAACAGGGACCTG ATGAAGAAAGTTGGCGTGACGCCCCCGCCTGGCATGCAGATGTCGCAGGCGCAATTCACGGACCTGGTGAAGAAGACCGC CGCCGCAGGCATCACACCGGTGGCCTCAGGCGTGGGGGACCGCCCCTACCCTGGCGCCTATCTGCTTCAGGAGATGCTCC TGCGCAAACTGGGGCTTGACGACTATCGCGCGTTGCTGACGGGGAAGCTGTCGTTCACTGACCCGCGTGTCATCGAAACC ATGAACTGGATCAAGGAGCTGGTGGATGCCGGCGCCTACCCGAAGAGCTTTTCGACGCTCAAGCTCGGCGAGTCGCACTA CTACTTTCACACCAATCCGGGCGCCATGATGTTCCCGATCGCCAGCTGGTACACCGGCCGCGCTTTCGTTTCAGCGGAAA AAGGGGGGCAGCCGCAAGGATTCCCACTCGGCCTGATGAAGTATCCGGCAGTCAACGGTGCGAAATGCCCGGAATGCAAG ACACTCGCCGTCGGTGGCAGCTACGTGATGTACTCGCGCAGCAAGAATAAAGAGTGCGCGGGCAAGCTCCTCAACTCGAT CGCCACTGTGGAAAATGGCAACAAGTGGATGGAGGAAGTGCTGCTGCAGACCGGCGTGCGCACGGACCCTTCGCGTATAC AGAGCATTCACGCGCAGTACTTCAAGGACCTGCAGGACCGCAGCATCGGCGCAAAATTCTTCATCGGCACACCACTGCAC TACATGAGCGGCAAGTGCGGGGACACCTTTTCGCAGGTACTCAATCGCGCCTTTCCCGCCGGTCTGATCAGCGTCAAGGA CGCGGCTGGCCAGATGGACGCAGCTTGCAAAGCGGCTTCCTGA
Upstream 100 bases:
>100_bases ACGCGCAATTCACCATGCCGGGTTATCCGGGCCGCTAGGCGATCGGCGATCGGCGCACCACAACCAAACGAAACCACCCA CCAACAACGAGGAGACAACC
Downstream 100 bases:
>100_bases CGTTTTTCCGAGATGCCGTCCATGTCCAATTCCATTTCGAACGCCTTGCCCGCCCCAAAACCCGGTTGGCGCCCGAAACT CGGCGCGTTGCTGGCGCCAC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MPLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEERVKKFEAATPQCKVNLQFVQ KSDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLDGHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDL MKKVGVTPPPGMQMSQAQFTDLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIET MNWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQGFPLGLMKYPAVNGAKCPECK TLAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEVLLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLH YMSGKCGDTFSQVLNRAFPAGLISVKDAAGQMDAACKAAS
Sequences:
>Translated_440_residues MPLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEERVKKFEAATPQCKVNLQFVQ KSDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLDGHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDL MKKVGVTPPPGMQMSQAQFTDLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIET MNWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQGFPLGLMKYPAVNGAKCPECK TLAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEVLLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLH YMSGKCGDTFSQVLNRAFPAGLISVKDAAGQMDAACKAAS >Mature_439_residues PLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEERVKKFEAATPQCKVNLQFVQK SDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLDGHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDLM KKVGVTPPPGMQMSQAQFTDLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIETM NWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQGFPLGLMKYPAVNGAKCPECKT LAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEVLLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLHY MSGKCGDTFSQVLNRAFPAGLISVKDAAGQMDAACKAAS
Specific function: Probably part of the binding-protein-dependent transport system yurMNO [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 48401; Mature: 48270
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCHHHH RVKKFEAATPQCKVNLQFVQKSDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLD HHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCC GHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDLMKKVGVTPPPGMQMSQAQFT CCEECCCHHHHHHHHHCCCCEEEEEEEEEEEEEEEECHHHHHHCCCCCCCCCCCHHHHHH DLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIET HHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH MNWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQG HHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCEEEEHHHCCCCCEEEEECCCCCCCC FPLGLMKYPAVNGAKCPECKTLAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEV CCCCCEECCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHH LLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLHYMSGKCGDTFSQVLNRAFPA HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHCCC GLISVKDAAGQMDAACKAAS CEEEEHHHCCCHHHHHCCCC >Mature Secondary Structure PLPRFLPSAVFVQRFVPALAGALACAALAGPVLAQTSQQTITMWSHWPDEQSKRGFVEE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCHHHH RVKKFEAATPQCKVNLQFVQKSDLYASVKTSVRTGQAPDIFWLEPDEIAFAKSGYLEPLD HHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCC GHINLNNLEDWARQSWSHNGKVYGLPVEAYTVELYYNRDLMKKVGVTPPPGMQMSQAQFT CCEECCCHHHHHHHHHCCCCEEEEEEEEEEEEEEEECHHHHHHCCCCCCCCCCCHHHHHH DLVKKTAAAGITPVASGVGDRPYPGAYLLQEMLLRKLGLDDYRALLTGKLSFTDPRVIET HHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH MNWIKELVDAGAYPKSFSTLKLGESHYYFHTNPGAMMFPIASWYTGRAFVSAEKGGQPQG HHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCEEEEHHHCCCCCEEEEECCCCCCCC FPLGLMKYPAVNGAKCPECKTLAVGGSYVMYSRSKNKECAGKLLNSIATVENGNKWMEEV CCCCCEECCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHH LLQTGVRTDPSRIQSIHAQYFKDLQDRSIGAKFFIGTPLHYMSGKCGDTFSQVLNRAFPA HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHCCC GLISVKDAAGQMDAACKAAS CEEEEHHHCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]