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The map label for this gene is rarA [H]

Identifier: 91789641

GI number: 91789641

Start: 3983179

End: 3984462

Strand: Reverse

Name: rarA [H]

Synonym: Bpro_3797

Alternate gene names: 91789641

Gene position: 3984462-3983179 (Counterclockwise)

Preceding gene: 91789642

Following gene: 91789640

Centisome position: 76.62

GC content: 62.54

Gene sequence:

>1284_bases
ATGCAGGCGCCGTTGGCGGAACGGCTCCGTCCGAAGAGCCTGGGCGAGGTCATTGGCCAGCAGCATCTGCTGGGCGAAGG
CATGCCGCTGCGCATTGCCTTTGAGTCCGGCCAGCCGCACAGCTGCATCCTCTGGGGGCCGCCTGGCGTTGGCAAGACCA
CGCTTGCCCGGCTGATGGCCAGCAGTTTCGATGCGCATTTCATCACCATTTCCGCCGTGCTCGGCGGTGTCAAGGACATT
CGCGAAGCGGTGGAACAGGCGAGCATCTGGCAGGGGCAGGGCGGCCGGCGCACCATCGTGTTTGTCGATGAGGTGCACCG
TTTCAACAAAAGCCAGCAGGACGCCTTCCTGCCGCACGTGGAAAGCGGCCTTTTCACTTTTATTGGCGCCACCACGGAGA
ACCCGTCGTTCGAGGTGAACTCCGCCCTGCTGTCGCGCGCGGTGGTTTACGTGCTGCAGCCGCTCGTCGAGGCCGACCTC
AAGAGGATCGTGGTCAAGGTCCTTGAAGAACGGGCGCTTCCAGCTATCGAAAGCATAGCGGATGCGGCGGTGGACCGGCT
CGTGGCCTATGCCGACGGCGACGCCCGGCGGCTGCTCAATACGCTGGAATCCCTTGGGGTGGCGGCGCGCAGCGAGAAAA
TCACAGTAGTGACCGATGCCTGGCTGCTGAAAGTGCTGGGCGAACGCCTGCGTCGCTACGACAAGGGCGGCGAGCAGTTC
TACGACACCATCTCCGCGCTGCACAAATCCGTGCGGGGTTCCGACCCCGACGCCGCACTCTACTGGTTCATGCGCATGCT
CGATGGTGGTGCCGAACCGCGTTACATGGCGCGCCGGCTGATTCGCATGGCCAGCGAAGACATCGGGCTGGCCGACCCGC
GCGCCCTCCGGCTGGCGCTGGATGCGGCGGAGGTCTATGAACGCCTCGGATCACCCGAAGGCGAACTGGCCCTGGCCCAA
TGCGTGATCTACCTGGCGGTGGCGCCCAAGTCCAATGCCGTTTACAAGGCCTTCAACGAGGCCAAGGCTTTTATCCGCAA
GGACGGCACCCGTCCCGTGCCGCTGCATTTGCGCAATGCGCCGACCAGGCTCATGAAAGAGCTCGATTATGGGAAAGACT
ACCGCTACGCCCATGATGAGGAGGACGGTTTTGCTGCCGGCGAGAATTATTTCCCCGAGGGGCTGCGTGCGCCCGACTGG
TACCGGCCCGTCAACCGCGGCCTGGAGATCAGGATTTCTGATAAGTTGAATGAGTTGAAACTGAAGAACAATCAGAAAAA
CTAA

Upstream 100 bases:

>100_bases
AGTTCAAGCCGCCGTCCGGTGCCGACGTGATCCGTCAGTAGCCGGGCGATGGACAGGCGCGTCACGCATTAGCCCGATGG
CTCCCAAGGTAGACCCACAG

Downstream 100 bases:

>100_bases
TAAAAAACAAATCCGGCTGATAAAGTCGGTTTTGGCGATACAAACCAACTTTCTCAAGGGTAAACCCCGCAAAAACGGGG
CTGTTGGCCCGATTCTCGCT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MQAPLAERLRPKSLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGVGKTTLARLMASSFDAHFITISAVLGGVKDI
REAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSRAVVYVLQPLVEADL
KRIVVKVLEERALPAIESIADAAVDRLVAYADGDARRLLNTLESLGVAARSEKITVVTDAWLLKVLGERLRRYDKGGEQF
YDTISALHKSVRGSDPDAALYWFMRMLDGGAEPRYMARRLIRMASEDIGLADPRALRLALDAAEVYERLGSPEGELALAQ
CVIYLAVAPKSNAVYKAFNEAKAFIRKDGTRPVPLHLRNAPTRLMKELDYGKDYRYAHDEEDGFAAGENYFPEGLRAPDW
YRPVNRGLEIRISDKLNELKLKNNQKN

Sequences:

>Translated_427_residues
MQAPLAERLRPKSLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGVGKTTLARLMASSFDAHFITISAVLGGVKDI
REAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSRAVVYVLQPLVEADL
KRIVVKVLEERALPAIESIADAAVDRLVAYADGDARRLLNTLESLGVAARSEKITVVTDAWLLKVLGERLRRYDKGGEQF
YDTISALHKSVRGSDPDAALYWFMRMLDGGAEPRYMARRLIRMASEDIGLADPRALRLALDAAEVYERLGSPEGELALAQ
CVIYLAVAPKSNAVYKAFNEAKAFIRKDGTRPVPLHLRNAPTRLMKELDYGKDYRYAHDEEDGFAAGENYFPEGLRAPDW
YRPVNRGLEIRISDKLNELKLKNNQKN
>Mature_427_residues
MQAPLAERLRPKSLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGVGKTTLARLMASSFDAHFITISAVLGGVKDI
REAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSRAVVYVLQPLVEADL
KRIVVKVLEERALPAIESIADAAVDRLVAYADGDARRLLNTLESLGVAARSEKITVVTDAWLLKVLGERLRRYDKGGEQF
YDTISALHKSVRGSDPDAALYWFMRMLDGGAEPRYMARRLIRMASEDIGLADPRALRLALDAAEVYERLGSPEGELALAQ
CVIYLAVAPKSNAVYKAFNEAKAFIRKDGTRPVPLHLRNAPTRLMKELDYGKDYRYAHDEEDGFAAGENYFPEGLRAPDW
YRPVNRGLEIRISDKLNELKLKNNQKN

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=45.3302961275626, Blast_Score=351, Evalue=7e-97,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=41.002277904328, Blast_Score=294, Evalue=8e-80,
Organism=Escherichia coli, GI1787119, Length=418, Percent_Identity=54.5454545454545, Blast_Score=441, Evalue=1e-125,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=41.6470588235294, Blast_Score=304, Evalue=2e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=209, Percent_Identity=25.8373205741627, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47499; Mature: 47499

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAPLAERLRPKSLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGVGKTTLARLMA
CCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHH
SSFDAHFITISAVLGGVKDIREAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHV
HCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCHHCCCHH
ESGLFTFIGATTENPSFEVNSALLSRAVVYVLQPLVEADLKRIVVKVLEERALPAIESIA
HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
DAAVDRLVAYADGDARRLLNTLESLGVAARSEKITVVTDAWLLKVLGERLRRYDKGGEQF
HHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHH
YDTISALHKSVRGSDPDAALYWFMRMLDGGAEPRYMARRLIRMASEDIGLADPRALRLAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
DAAEVYERLGSPEGELALAQCVIYLAVAPKSNAVYKAFNEAKAFIRKDGTRPVPLHLRNA
HHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCC
PTRLMKELDYGKDYRYAHDEEDGFAAGENYFPEGLRAPDWYRPVNRGLEIRISDKLNELK
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCHHHHH
LKNNQKN
CCCCCCC
>Mature Secondary Structure
MQAPLAERLRPKSLGEVIGQQHLLGEGMPLRIAFESGQPHSCILWGPPGVGKTTLARLMA
CCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHH
SSFDAHFITISAVLGGVKDIREAVEQASIWQGQGGRRTIVFVDEVHRFNKSQQDAFLPHV
HCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCCHHCCCHH
ESGLFTFIGATTENPSFEVNSALLSRAVVYVLQPLVEADLKRIVVKVLEERALPAIESIA
HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
DAAVDRLVAYADGDARRLLNTLESLGVAARSEKITVVTDAWLLKVLGERLRRYDKGGEQF
HHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHH
YDTISALHKSVRGSDPDAALYWFMRMLDGGAEPRYMARRLIRMASEDIGLADPRALRLAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
DAAEVYERLGSPEGELALAQCVIYLAVAPKSNAVYKAFNEAKAFIRKDGTRPVPLHLRNA
HHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCC
PTRLMKELDYGKDYRYAHDEEDGFAAGENYFPEGLRAPDWYRPVNRGLEIRISDKLNELK
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCHHHHH
LKNNQKN
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]