Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91789586

Identifier: 91789586

GI number: 91789586

Start: 3945886

End: 3947346

Strand: Reverse

Name: 91789586

Synonym: Bpro_3741

Alternate gene names: NA

Gene position: 3947346-3945886 (Counterclockwise)

Preceding gene: 91789587

Following gene: 91789585

Centisome position: 75.91

GC content: 67.01

Gene sequence:

>1461_bases
ATGCCCGTCAGCTTCAACGCTATTCCCATTTCGCTGCGCACGCCTGGCCAGTACATCGAGTTTGACTCCAGCCGTGCCCA
GCAGGGCCTGCCGGTGCAGCCGCACAAGATCATGGTGTTTGGCCAGCGCTTGGCCACCGGCCTGGTAGTTGCCGGCGTGC
CTACCCGGATCACCAGCGCGGCCCAGGCCGAGGCCGCGTTTGGCCGGGGCTCGATGCTCTCGCACATGTTCCAGCGGCTG
AAGCTGGCGAACGCCTACACCGAGAGCTGGGCCTGCGCGTCTGATGACAACGGCGCGGGTGTGGCGGCCACGGGCACCAT
TGTGGCCAGCGGCGCGCCGACCGAGAGCGGCACGCTGAACCTGTACATTGGCGGGCGCCAGGTGCAGGTGGCTGTTGCTG
CCGGGCAAACGGCTGCGCAGGTGGCTACGGCCATCCAGGCGGCCGTGGCGGCCAGCACGGACCTGGCTGTAACCGGCGCT
GTGGCTGTGGCCACCGTGACGCTGACGGCCCGCCACAAGGGCGAGTGCGGCAACTTCATCGACATTCGGCCCAACTACTA
CTTCGGCGAGCGCACGCCCAAGGGCCTGGTCATCACCATCACGGCGATGACTGGCGGCACCGGCAACCCTGATGCGGCCA
CGCCCATCGCCGCGATTGGCGCGGAGCAGTACCAGACGGTCATCATGCCGTGGACTGACGCGGCCAACCTGGTGAAGCTG
GAGACCGAACTGGCCGCGCGCTTTGGCCCGCTGGTGATGAAGGAAGGCCAGGCCTTTGCGGCCGCCAGCGGCACGCACGC
CAGCATTGACACGCTGGTGGCCGCGCGCAACAGCCCGCACGTCAGCATCATGGGCAGCGGCAAGAGCCCGAACCCGCCCT
ACGAATGGGCGGCCGTGCTGGGCGCTGTGGATGCCTTTGAGCCTGACCCGGCCCGCCCGCGCCAGACGCTGGTGCTGACC
GGCCTGATGCCGCCCGCAGAGCAGGACCGCTTCACGCAGACCGAGCGCAACATTCACCTGACGGATGGCGCTGCCACCTT
CATCGTGGACACCGGTGGCCGCTGTCTGATTGAGCGGCTGACCACGACTTACAAAACCAACAGCTTCGGTGTGCCGGACA
TTGCGTACCTGGACATCGAGACGATGCGCACGATTGCCTACCTGCGGTTCAGCGTGCGCAGCCGGATTGGCCTGCGCTTC
CCGCGCCACAAGCTGGCGAACGACGGCACCCGGTTTGGCGCTGGCCAGGCCATCGTGACGCCGAAGATCATCCGCGCCGA
GCTGCTGGCCCTGTTCCGCGAGTGGGAGCTGGCCGGCCTGGCTGAGAACTTCGACCAGTTCAACACGGACCTGATCGTGG
AGCGCAACGGCAGCGACCCGAACCGCATCGACGCGATCATTCCGCCCGACGTGATCAACCAGCTGCGCGTCTTCGCTGGC
CAGATTCAGTTCCGCCTGTAA

Upstream 100 bases:

>100_bases
CACCTACTGGATACGCCGCCTGAATGACGGCGACGTGAGCGAGGGCGTTGCCCCCGCGCAAGCTGCCGCCAAACCTGCTT
CAAAGAAGGAGTAATCCAAA

Downstream 100 bases:

>100_bases
CAACCCCTAAATACCAGGAGTAAATGTATGAGTGGAATGAGACTAGGAAAGGCCTTCATCAAGGCCAACGGCGAGCTGCT
CGAAACGCTGCCCGGCGCAA

Product: bacteriophage Mu tail sheath

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MPVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSAAQAEAAFGRGSMLSHMFQRL
KLANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLNLYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGA
VAVATVTLTARHKGECGNFIDIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKL
ETELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVLGAVDAFEPDPARPRQTLVLT
GLMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERLTTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRF
PRHKLANDGTRFGAGQAIVTPKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAG
QIQFRL

Sequences:

>Translated_486_residues
MPVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSAAQAEAAFGRGSMLSHMFQRL
KLANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLNLYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGA
VAVATVTLTARHKGECGNFIDIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKL
ETELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVLGAVDAFEPDPARPRQTLVLT
GLMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERLTTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRF
PRHKLANDGTRFGAGQAIVTPKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAG
QIQFRL
>Mature_485_residues
PVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSAAQAEAAFGRGSMLSHMFQRLK
LANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLNLYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGAV
AVATVTLTARHKGECGNFIDIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKLE
TELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVLGAVDAFEPDPARPRQTLVLTG
LMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERLTTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRFP
RHKLANDGTRFGAGQAIVTPKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAGQ
IQFRL

Specific function: Major component of the tail [H]

COG id: COG4386

COG function: function code R; Mu-like prophage tail sheath protein gpL

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To phage Mu protein L [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007067 [H]

Pfam domain/function: PF04984 Phage_sheath_1 [H]

EC number: NA

Molecular weight: Translated: 51754; Mature: 51622

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSA
CCCCCCEEEEEEECCCCEEEECCCHHCCCCCCCCCEEEEEECHHHCCEEEECCCHHHHHH
AQAEAAFGRGSMLSHMFQRLKLANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLN
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECEEEECCCCCCCCEEE
LYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGAVAVATVTLTARHKGECGNFI
EEECCEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEEEECCCCCCCCEE
DIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKL
ECCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCEEEE
ETELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVL
HHHHHHHHCCEEEECCCEEEECCCCCCCHHHHEEECCCCEEEEEECCCCCCCCHHHHHHH
GAVDAFEPDPARPRQTLVLTGLMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERL
HHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHH
TTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRFPRHKLANDGTRFGAGQAIVT
HHHEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEC
PKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH
QIQFRL
EEEEEC
>Mature Secondary Structure 
PVSFNAIPISLRTPGQYIEFDSSRAQQGLPVQPHKIMVFGQRLATGLVVAGVPTRITSA
CCCCCEEEEEEECCCCEEEECCCHHCCCCCCCCCEEEEEECHHHCCEEEECCCHHHHHH
AQAEAAFGRGSMLSHMFQRLKLANAYTESWACASDDNGAGVAATGTIVASGAPTESGTLN
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECEEEECCCCCCCCEEE
LYIGGRQVQVAVAAGQTAAQVATAIQAAVAASTDLAVTGAVAVATVTLTARHKGECGNFI
EEECCEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEEEECCCCCCCCEE
DIRPNYYFGERTPKGLVITITAMTGGTGNPDAATPIAAIGAEQYQTVIMPWTDAANLVKL
ECCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCEEEE
ETELAARFGPLVMKEGQAFAAASGTHASIDTLVAARNSPHVSIMGSGKSPNPPYEWAAVL
HHHHHHHHCCEEEECCCEEEECCCCCCCHHHHEEECCCCEEEEEECCCCCCCCHHHHHHH
GAVDAFEPDPARPRQTLVLTGLMPPAEQDRFTQTERNIHLTDGAATFIVDTGGRCLIERL
HHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHH
TTTYKTNSFGVPDIAYLDIETMRTIAYLRFSVRSRIGLRFPRHKLANDGTRFGAGQAIVT
HHHEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEC
PKIIRAELLALFREWELAGLAENFDQFNTDLIVERNGSDPNRIDAIIPPDVINQLRVFAG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH
QIQFRL
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]