| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91789541
Identifier: 91789541
GI number: 91789541
Start: 3905835
End: 3906731
Strand: Reverse
Name: 91789541
Synonym: Bpro_3695
Alternate gene names: NA
Gene position: 3906731-3905835 (Counterclockwise)
Preceding gene: 91789543
Following gene: 91789539
Centisome position: 75.13
GC content: 65.11
Gene sequence:
>897_bases ATGAAACGCTGGATTAAATGGAGCGCTGCCGGCCTGGGCTTGGCCGTACTGCTGGTCGCGGGTGCGGCCGTGGTGGGCAC GCAGCTGGCCGAGCGAAAACGCATGCGCCAGGTGAGTGTGCCGGTGCAACCCGTGGCGTACGTCTCGGATGCCCAGGCGC TGGAGCGCGGCAAGTATTTATTCCAGTCGCGCGGTTGCGTTGACTGCCATGGCGTGAACGGGGGCGGGCGCGACTTTGTC AATGACGGCAAAGGCACGCGCATCGCCGGACCCAATATCACGCCTGGCGGTGTGGTGGCCGGGTACAAGCCCGAAGACTG GGTTCGCACGATACGCCATGGGGTCAAACCCGATGGGCACCCGGCGCTGATCATGCCCAGTGAGGACTACAACCGCTTCA CCAACGAAGACCTGGCCGCATTGGTGGCGTATGTGCGCAGCTTGCCGCCACAAAATCCCCGTGCCGCGGTGATCGAACTG CCCTTGCCAGCCTGGGTGCTCTACGGCTTTGACGCCATTCCCGATGCGGCGCAACGGATTGACCACTCGCTGCCGCCCTC AACCCCGGTGGCGGCTGCCGTGACGGTGCAGCATGGCGCCTATGTGGCCAATATGTGCATCGGTTGCCATGGCGAGAAGC TGTCCGGCGGGAAGATTCCCGGTGGCCCCCCGGACTGGCCGGCGGCCGCCAACATCACGCCCGGCGAGGGCAGTGCCATG GGGCGTTACAAGGATGCAGCGCAGTTCATGGCCATGATGCGCAGCGGCAAACGGCCTGACGGCACAGCCATCCAGGTGAT GCCGTTTGGATCGCTGTCGGCCATGAACGATGTCGATACCCGAGCGCTGCACGCTTACCTGCAAACGGTGCCGGCCCGAC CTGCGGGCCAGCGTTAG
Upstream 100 bases:
>100_bases CACTGACAAAAAATCCGCGGCTGCCTAAACTGCCCGATTTGCCTGCGACGATGCGGCCCGGTGGTGGCGCGCCATCGAGG CTAATGGAGGGGGAAATACA
Downstream 100 bases:
>100_bases GCAGGACTTCGCTTGGCGAAGCCTGCCATGACTCATGAGCAGGTGCCCTGAGCGCCCAAGGCCTTGGCCTTGAGCACGTC TTGTCCCGAGCGGATGCCAC
Product: class I cytochrome c
Products: NA
Alternate protein names: Cytochrome C Class I; Cytochrome C-Related Protein; Di-Heme Cytochrome C-Signal Peptide; Class I Diheme Cytochrome C; Gluconate 2-Dehydrogenase Cytochrome Subunit C; Membrane-Bound Alcohol Dehydrogenase Cytochromec Subunit; Diheme Cytochrome C-Type; Cytochrome C
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MKRWIKWSAAGLGLAVLLVAGAAVVGTQLAERKRMRQVSVPVQPVAYVSDAQALERGKYLFQSRGCVDCHGVNGGGRDFV NDGKGTRIAGPNITPGGVVAGYKPEDWVRTIRHGVKPDGHPALIMPSEDYNRFTNEDLAALVAYVRSLPPQNPRAAVIEL PLPAWVLYGFDAIPDAAQRIDHSLPPSTPVAAAVTVQHGAYVANMCIGCHGEKLSGGKIPGGPPDWPAAANITPGEGSAM GRYKDAAQFMAMMRSGKRPDGTAIQVMPFGSLSAMNDVDTRALHAYLQTVPARPAGQR
Sequences:
>Translated_298_residues MKRWIKWSAAGLGLAVLLVAGAAVVGTQLAERKRMRQVSVPVQPVAYVSDAQALERGKYLFQSRGCVDCHGVNGGGRDFV NDGKGTRIAGPNITPGGVVAGYKPEDWVRTIRHGVKPDGHPALIMPSEDYNRFTNEDLAALVAYVRSLPPQNPRAAVIEL PLPAWVLYGFDAIPDAAQRIDHSLPPSTPVAAAVTVQHGAYVANMCIGCHGEKLSGGKIPGGPPDWPAAANITPGEGSAM GRYKDAAQFMAMMRSGKRPDGTAIQVMPFGSLSAMNDVDTRALHAYLQTVPARPAGQR >Mature_298_residues MKRWIKWSAAGLGLAVLLVAGAAVVGTQLAERKRMRQVSVPVQPVAYVSDAQALERGKYLFQSRGCVDCHGVNGGGRDFV NDGKGTRIAGPNITPGGVVAGYKPEDWVRTIRHGVKPDGHPALIMPSEDYNRFTNEDLAALVAYVRSLPPQNPRAAVIEL PLPAWVLYGFDAIPDAAQRIDHSLPPSTPVAAAVTVQHGAYVANMCIGCHGEKLSGGKIPGGPPDWPAAANITPGEGSAM GRYKDAAQFMAMMRSGKRPDGTAIQVMPFGSLSAMNDVDTRALHAYLQTVPARPAGQR
Specific function: Unknown
COG id: COG2010
COG function: function code C; Cytochrome c, mono- and diheme variants
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31638; Mature: 31638
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRWIKWSAAGLGLAVLLVAGAAVVGTQLAERKRMRQVSVPVQPVAYVSDAQALERGKYL CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH FQSRGCVDCHGVNGGGRDFVNDGKGTRIAGPNITPGGVVAGYKPEDWVRTIRHGVKPDGH HHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCHHHHHHHHHCCCCCCC PALIMPSEDYNRFTNEDLAALVAYVRSLPPQNPRAAVIELPLPAWVLYGFDAIPDAAQRI CEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHH DHSLPPSTPVAAAVTVQHGAYVANMCIGCHGEKLSGGKIPGGPPDWPAAANITPGEGSAM HCCCCCCCCCEEEEEECCCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRYKDAAQFMAMMRSGKRPDGTAIQVMPFGSLSAMNDVDTRALHAYLQTVPARPAGQR CHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHCHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKRWIKWSAAGLGLAVLLVAGAAVVGTQLAERKRMRQVSVPVQPVAYVSDAQALERGKYL CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH FQSRGCVDCHGVNGGGRDFVNDGKGTRIAGPNITPGGVVAGYKPEDWVRTIRHGVKPDGH HHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCHHHHHHHHHCCCCCCC PALIMPSEDYNRFTNEDLAALVAYVRSLPPQNPRAAVIELPLPAWVLYGFDAIPDAAQRI CEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHH DHSLPPSTPVAAAVTVQHGAYVANMCIGCHGEKLSGGKIPGGPPDWPAAANITPGEGSAM HCCCCCCCCCEEEEEECCCCEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRYKDAAQFMAMMRSGKRPDGTAIQVMPFGSLSAMNDVDTRALHAYLQTVPARPAGQR CHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHCHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA