| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is lldD [H]
Identifier: 91789525
GI number: 91789525
Start: 3889953
End: 3891104
Strand: Direct
Name: lldD [H]
Synonym: Bpro_3678
Alternate gene names: 91789525
Gene position: 3889953-3891104 (Clockwise)
Preceding gene: 91789524
Following gene: 91789540
Centisome position: 74.8
GC content: 62.67
Gene sequence:
>1152_bases ATGCCCGTCATCACCAATATCGAAGACCTGCGCGTTCTGGCGCAAAAACGTGTTCCCCGCATGTTCTACGACTATGCCGA CTCCGGCTCGTGGACGGAGAGCACCTACCGCGCCAACGAGAGCGACTTCCAGAAGATCAAGCTGCGCCAGCGCGTGGCCG TCAACATGGAAAACCGCAGCACGGCGACCCGGATGGTGGGCCTGGACGTGACGATGCCAGTGGCCATTGCGCCGGTCGGG CTGACCGGCATGCAGCATGCGGATGGCGAGATTCTGGCGGCGAAGGCGGCTGAAAAATTTGGCATTCCGTTCATTCTGTC CACCATGAGCATCTGCTCGATTGAGGACATTGCGGCCCACACCCAATCACCATTCTGGTTTCAGCTCTACATGATGCGTG ACCGGGACGCCATGGCGGCGATGATTGAACGTGCCCGCAAGGCCCGCTGCACCGCGCTGGTACTGACGCTGGACTTGCAG GTGATCGGGCAGCGTCACAAGGACCTCAAGAACGGCCTGACCGCGCCCCCCAAGCCGACCCTGGCGAACATCATCAACCT GATGACCAAGCCGCGCTGGTGCCTGGGCATGGCGGGCACCAAGCGGCACACCTTTGGCAATCTGGTGGGCCACGTCAAAG GCGTGAGCGATATGCGCTCGCTGTCGGCCTGGACCAACGAGCAATTTGATCCGCGTCTGTCGTGGGCCGATGTGGCCTGG GTCAAAGAGCGCTGGGGCGGCAAACTGATCCTCAAGGGGATCCAGGATGTGGAAGACGCAAAGCTGGCCGTGCAAAGCGG CGCTGACGCCATCGTCGTCAGCAACCATGGTGGACGCCAGCTTGACGGCGCGCAGTCCAGCATCGAGGCGCTGCCTGCCA TCGTCGATGCCGTTGGCGCCAACATTGAGGTCTGGATGGACGGCGGTATCCGCTCCGGTCAGGATGTTCTCAAAGCGTGG GCGCTGGGCGCGCGGGGCACGCTGATCGGCCGCGCCATGGTCTATGGCCTGGGCGCCATGGGCGAAGCAGGCGTCACCAA GGCGCTGCAGATCATCCACAAGGAGCTGGACATCACGATGGCCTTTTGCGGCAGGACTGACATCAACACCGTGGACAAGG GCATCCTGCTGCCCGGCACTTACCCCGCCTGA
Upstream 100 bases:
>100_bases GAAAAATTACACCGGTGCGCCTGATTCCAAAAAACTTTCAAACCGCCGGGCTGGCAAACTGGCTACGATGCGGGTCGAGA ACCCAGGAGTTACCCCACCC
Downstream 100 bases:
>100_bases CGGGCGAGGCCGGTGCGCAAGGGCGGGGGGGGCGGTCCAGGCCGCCCCTCACGTCGCCCCGCCTGTGCGTCAGCGCCTGG AGCCCAAGGCTTAGAAGCTG
Product: L-lactate dehydrogenase (cytochrome)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MPVITNIEDLRVLAQKRVPRMFYDYADSGSWTESTYRANESDFQKIKLRQRVAVNMENRSTATRMVGLDVTMPVAIAPVG LTGMQHADGEILAAKAAEKFGIPFILSTMSICSIEDIAAHTQSPFWFQLYMMRDRDAMAAMIERARKARCTALVLTLDLQ VIGQRHKDLKNGLTAPPKPTLANIINLMTKPRWCLGMAGTKRHTFGNLVGHVKGVSDMRSLSAWTNEQFDPRLSWADVAW VKERWGGKLILKGIQDVEDAKLAVQSGADAIVVSNHGGRQLDGAQSSIEALPAIVDAVGANIEVWMDGGIRSGQDVLKAW ALGARGTLIGRAMVYGLGAMGEAGVTKALQIIHKELDITMAFCGRTDINTVDKGILLPGTYPA
Sequences:
>Translated_383_residues MPVITNIEDLRVLAQKRVPRMFYDYADSGSWTESTYRANESDFQKIKLRQRVAVNMENRSTATRMVGLDVTMPVAIAPVG LTGMQHADGEILAAKAAEKFGIPFILSTMSICSIEDIAAHTQSPFWFQLYMMRDRDAMAAMIERARKARCTALVLTLDLQ VIGQRHKDLKNGLTAPPKPTLANIINLMTKPRWCLGMAGTKRHTFGNLVGHVKGVSDMRSLSAWTNEQFDPRLSWADVAW VKERWGGKLILKGIQDVEDAKLAVQSGADAIVVSNHGGRQLDGAQSSIEALPAIVDAVGANIEVWMDGGIRSGQDVLKAW ALGARGTLIGRAMVYGLGAMGEAGVTKALQIIHKELDITMAFCGRTDINTVDKGILLPGTYPA >Mature_382_residues PVITNIEDLRVLAQKRVPRMFYDYADSGSWTESTYRANESDFQKIKLRQRVAVNMENRSTATRMVGLDVTMPVAIAPVGL TGMQHADGEILAAKAAEKFGIPFILSTMSICSIEDIAAHTQSPFWFQLYMMRDRDAMAAMIERARKARCTALVLTLDLQV IGQRHKDLKNGLTAPPKPTLANIINLMTKPRWCLGMAGTKRHTFGNLVGHVKGVSDMRSLSAWTNEQFDPRLSWADVAWV KERWGGKLILKGIQDVEDAKLAVQSGADAIVVSNHGGRQLDGAQSSIEALPAIVDAVGANIEVWMDGGIRSGQDVLKAWA LGARGTLIGRAMVYGLGAMGEAGVTKALQIIHKELDITMAFCGRTDINTVDKGILLPGTYPA
Specific function: Unknown
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FMN hydroxy acid dehydrogenase domain [H]
Homologues:
Organism=Homo sapiens, GI11068137, Length=377, Percent_Identity=33.1564986737401, Blast_Score=233, Evalue=2e-61, Organism=Homo sapiens, GI54234014, Length=371, Percent_Identity=33.9622641509434, Blast_Score=206, Evalue=3e-53, Organism=Homo sapiens, GI7705393, Length=371, Percent_Identity=33.9622641509434, Blast_Score=206, Evalue=3e-53, Organism=Escherichia coli, GI1790033, Length=379, Percent_Identity=42.2163588390501, Blast_Score=323, Evalue=9e-90, Organism=Caenorhabditis elegans, GI193208036, Length=372, Percent_Identity=34.9462365591398, Blast_Score=223, Evalue=1e-58, Organism=Caenorhabditis elegans, GI32566217, Length=292, Percent_Identity=31.8493150684932, Blast_Score=150, Evalue=1e-36, Organism=Saccharomyces cerevisiae, GI6323587, Length=384, Percent_Identity=29.9479166666667, Blast_Score=175, Evalue=1e-44, Organism=Drosophila melanogaster, GI281363140, Length=372, Percent_Identity=36.0215053763441, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI78707190, Length=372, Percent_Identity=36.0215053763441, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI78707188, Length=372, Percent_Identity=36.0215053763441, Blast_Score=233, Evalue=2e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR012133 - InterPro: IPR000262 - InterPro: IPR008259 - InterPro: IPR020920 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =1.1.2.3 [H]
Molecular weight: Translated: 41820; Mature: 41689
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: PS00557 FMN_HYDROXY_ACID_DH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVITNIEDLRVLAQKRVPRMFYDYADSGSWTESTYRANESDFQKIKLRQRVAVNMENRS CCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHEECCCCCC TATRMVGLDVTMPVAIAPVGLTGMQHADGEILAAKAAEKFGIPFILSTMSICSIEDIAAH CCCEEEECCEECCCEEECCCCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHH TQSPFWFQLYMMRDRDAMAAMIERARKARCTALVLTLDLQVIGQRHKDLKNGLTAPPKPT CCCCEEEEEEEECCCHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHCCCCCCCCCH LANIINLMTKPRWCLGMAGTKRHTFGNLVGHVKGVSDMRSLSAWTNEQFDPRLSWADVAW HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHH VKERWGGKLILKGIQDVEDAKLAVQSGADAIVVSNHGGRQLDGAQSSIEALPAIVDAVGA HHHHCCCEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC NIEVWMDGGIRSGQDVLKAWALGARGTLIGRAMVYGLGAMGEAGVTKALQIIHKELDITM CEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCEEE AFCGRTDINTVDKGILLPGTYPA EECCCCCCCCCCCCEECCCCCCC >Mature Secondary Structure PVITNIEDLRVLAQKRVPRMFYDYADSGSWTESTYRANESDFQKIKLRQRVAVNMENRS CCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHEECCCCCC TATRMVGLDVTMPVAIAPVGLTGMQHADGEILAAKAAEKFGIPFILSTMSICSIEDIAAH CCCEEEECCEECCCEEECCCCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHH TQSPFWFQLYMMRDRDAMAAMIERARKARCTALVLTLDLQVIGQRHKDLKNGLTAPPKPT CCCCEEEEEEEECCCHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHCCCCCCCCCH LANIINLMTKPRWCLGMAGTKRHTFGNLVGHVKGVSDMRSLSAWTNEQFDPRLSWADVAW HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHH VKERWGGKLILKGIQDVEDAKLAVQSGADAIVVSNHGGRQLDGAQSSIEALPAIVDAVGA HHHHCCCEEEEHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCC NIEVWMDGGIRSGQDVLKAWALGARGTLIGRAMVYGLGAMGEAGVTKALQIIHKELDITM CEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCEEE AFCGRTDINTVDKGILLPGTYPA EECCCCCCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA