Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91789511

Identifier: 91789511

GI number: 91789511

Start: 3861677

End: 3862966

Strand: Reverse

Name: 91789511

Synonym: Bpro_3661

Alternate gene names: NA

Gene position: 3862966-3861677 (Counterclockwise)

Preceding gene: 91789512

Following gene: 91789509

Centisome position: 74.28

GC content: 68.91

Gene sequence:

>1290_bases
ATGCGCGCCGCCCTCTGGCTTGTGGCCCTGTTTGGTGTCGCCGTGGCCGTGGCCCTGTTTGCGGGCAACAACCAGGCGGT
GGTCACCATCTTCTGGCCGCCGCACCGGCTCGATGTGTCCTTCAACCTGATGGTGCTGGTACTGGCAGGCTTTTTCATGC
TGCTGTACGGTGCCCTGCGCGCCGTGTCGGCCCTGTTCGCCCTGCCGCTGGAAGCGCGGCGCTGGCGTGCCCAGCAGAAA
GAGCGTGCCATGTACGGCTCCCTGATGGACTCGCTGGCGAACCTGCTGGCGGGGCGCTACATCCGGGCCGCCAAGTCGGC
GCAAAACGCGCTGGTGCAGGAAAAAAGCCTGGGCCTGCTCACCGATCAAACTGGCCACGCGACCGGCCACAGCGCCAGCC
GTTCCACGCAATTGCGATCGCTGGCCCATCTGCTGGTAGCGGAAAGCGCGCAGTCCCTGCAAAACAGGGCCTTGCGCGAC
CAGCATCTGCAGCTGGCGCTCCAAAATGCGGCCCAGCGCCATGCGCAGGAAGTGCGCGAGGGTGTGCAGCTTCGCGCGGC
GCGCTGGGCGCTGGAAGACCGCGATGCCGGCGCCGCACTGGAGTGGCTGACGCAGCTGCCCCAAGGCGCCGCGCGGCGCA
CCCTGGCCCTGCGCATGAAGCTGCGCGCCACCCGCCAGGTCAAGCAGACCTTGCTGGCGCTGGACACCGCCCGCCTGCTG
GCCAAGCACCGTGCTTTTTCACAGGCGGCGGCGCAGAGCATTGTGCGCGGCCTGGCGCTGGAGCTGCTGAACGATGCGCA
CGATCCGGCGCAGTTGCAGCAAGCCTGGTTTTCGCTGGATGAGAGCGAGCGGGCCATGCCCGAGCTGGTGGTGCATGCGG
CATCGCGGCTGATGGCGCTGCACGGCGACGCCGGGCTGGCGCGCACGTGGCTGCTGCAGGTGTGGGACCGCATGATGGAG
CCGCGCTCGGAGATCGGCGACAACCTGCGCATCAAGCTGATCACGGGGCTGGAAGCTGGTCTGGACTCCCTGGATGCGGC
CTGGCTGGCGCGCATTGAAGCGGCGCAGCTCAGCCGGCCGCGCGACGCCAATCTGCAGTACCTGGCCGGCATGGCCTGCC
TGAACCGTCAGCTGTGGGGCAAGGCCCGCCAGTTGCTCTCGCAAGCCGCCATGGGCCTGCAGGATGCCACGCTGCACCGC
AATGCCTGGCGGGCGCTGGCGGTGCTGGCCGAGCAGCGTGAGGATGAGCCGGCGGCGGCGCAGGCCTACAAGCGCGCTGC
CCAGCTGTAG

Upstream 100 bases:

>100_bases
GGTGCAGGGCCAGCTCAAAACCAGCGAGCTGCCCCGCCTGGATGAAACCATGTCTGCGCTGGCCACTGCGGCCGCAGGCC
GTTAAGGGCAGGGGCCAACG

Downstream 100 bases:

>100_bases
AGGCGCCAGGCCTTGCTGCCCAAGCCCCGGTGGCCGGGTGCCGCTGCACCGCGCCATGGGCACCACACACGTCCCGGAAC
GCCGGCGCAATGCGTCGAAC

Product: putative porphyrin biosynthesis-like protein

Products: NA

Alternate protein names: HemY Domain Protein; HemY-Like Protein; HemY Protein; Protoheme Ix Synthesis Protein; Porphyrin Biosynthesis Protein; Protein Porphyrin Biosynthesis; Hemy Domain-Containing Protein; Porphyrin Biosynthesis Related Protein; Porphyrin Biosynthesis-Related Protein; HemY Protein N-Terminus Family Protein

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALRAVSALFALPLEARRWRAQQK
ERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLLTDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRD
QHLQLALQNAAQRHAQEVREGVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL
AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMALHGDAGLARTWLLQVWDRMME
PRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRPRDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHR
NAWRALAVLAEQREDEPAAAQAYKRAAQL

Sequences:

>Translated_429_residues
MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALRAVSALFALPLEARRWRAQQK
ERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLLTDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRD
QHLQLALQNAAQRHAQEVREGVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL
AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMALHGDAGLARTWLLQVWDRMME
PRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRPRDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHR
NAWRALAVLAEQREDEPAAAQAYKRAAQL
>Mature_429_residues
MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALRAVSALFALPLEARRWRAQQK
ERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLLTDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRD
QHLQLALQNAAQRHAQEVREGVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL
AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMALHGDAGLARTWLLQVWDRMME
PRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRPRDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHR
NAWRALAVLAEQREDEPAAAQAYKRAAQL

Specific function: Unknown

COG id: COG3071

COG function: function code H; Uncharacterized enzyme of heme biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47393; Mature: 47393

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALR
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEECCHHHHHHHHHHHHHHHHHHHHH
AVSALFALPLEARRWRAQQKERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
TDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRDQHLQLALQNAAQRHAQEVRE
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL
HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
HGDAGLARTWLLQVWDRMMEPRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRP
CCCCHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCHHCHHHHHHHHHHHHHHHHCCCC
RDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHRNAWRALAVLAEQREDEPAAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
QAYKRAAQL
HHHHHHHCC
>Mature Secondary Structure
MRAALWLVALFGVAVAVALFAGNNQAVVTIFWPPHRLDVSFNLMVLVLAGFFMLLYGALR
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEECCHHHHHHHHHHHHHHHHHHHHH
AVSALFALPLEARRWRAQQKERAMYGSLMDSLANLLAGRYIRAAKSAQNALVQEKSLGLL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
TDQTGHATGHSASRSTQLRSLAHLLVAESAQSLQNRALRDQHLQLALQNAAQRHAQEVRE
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVQLRAARWALEDRDAGAALEWLTQLPQGAARRTLALRMKLRATRQVKQTLLALDTARLL
HHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKHRAFSQAAAQSIVRGLALELLNDAHDPAQLQQAWFSLDESERAMPELVVHAASRLMAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
HGDAGLARTWLLQVWDRMMEPRSEIGDNLRIKLITGLEAGLDSLDAAWLARIEAAQLSRP
CCCCHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCHHCHHHHHHHHHHHHHHHHCCCC
RDANLQYLAGMACLNRQLWGKARQLLSQAAMGLQDATLHRNAWRALAVLAEQREDEPAAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
QAYKRAAQL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA