| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is era [H]
Identifier: 91789484
GI number: 91789484
Start: 3835567
End: 3836511
Strand: Reverse
Name: era [H]
Synonym: Bpro_3634
Alternate gene names: 91789484
Gene position: 3836511-3835567 (Counterclockwise)
Preceding gene: 91789485
Following gene: 91789483
Centisome position: 73.78
GC content: 60.11
Gene sequence:
>945_bases ATGCTGGCCCAGGCCTTGTCATCGCGTGCTGCAGCGGGGGCTGTTCCAGATACTCCGCCCGTCGAAACGCAGCGCTGCGG CCTGATTGCCATCGTCGGCAAGCCCAACGTGGGCAAATCCACCTTGCTCAACGCCCTGGTGGGCCAGAAGATCAGCATCA CCTCGCGCAAGGCACAGACCACGCGCCACCGTATCACCGGTGTGCGCACGGTGGGCGCCACTCAATTTGTGTTTGTGGAT ACCCCGGGTTTCCAGACCCGGCACGGCAATGCCCTGAACCGTTCGCTGAACCGCACGGTGGTGGGCGCCGTCAACGACGT GGACCTGATTGTTTTTGTGGTGGAAGCCGGCCAGTTCAACCTGGCCGATGCCAAGGTGCTGGCCCTGTTGCCCGCAAAAA CACCGGCCATTCTGTTGGCCAACAAGTTTGACCTGATCTACCGCCGCGCCGAGCTTGCGCCCTGGTTGCGCTCCATGCAG GAGCGTCACAACTTTGCCGAGTTTGTGCCCATGTCCGCCAACAACGCCAAGGATATTGAACGGCTGTTCGGCATCTGCGA GAAGTATTTGCCGGTGCAGCCCTGGATGTACCGCGCCGACGAACTGACCGACCGCAGCGACCGCTTCATGGCCGCCGAGA TCATTCGCGAAAAACTGTTTCGCCTGACCGGCGACGAGTTGCCTTACACCTCCACGGTGATCATTGACAAGTATGAAGAA GAGGGCAACCTGCGCAGGATTGCCGCCACCATCGTGGTAGAGCGCGATGGCCACAAGGGCATGGTGATTGGCGAGAAGGG CGAAAAGCTCAAGCGAATTGGCACCGAGTCCCGCCATGAGCTTGAAACGCTCACCGGCAACAAGGTATTCCTGGAGATAT GGGTCAAGGTGCGCTCGGGTTGGGCGGACGACGAAGCTCGGGTCAAGACATTCGGGTATGAATGA
Upstream 100 bases:
>100_bases AGAGACCATGAGTACAGGTAAAAAAGAGCCGAAGAAGCCGGCGAATATATCGCTTGAATTGCCCGCTGACGAGGCGCAGG GTCCTGACGCGCTGGATGCC
Downstream 100 bases:
>100_bases GGCCCCCACGCTTGTCGCTTCGCGTACTGCGCTGCCCCCCGAGGGGGCCGCTGCGCCTGCGGCCCGGCGAAGCCGGTTCC GCGGCCCCTGCTGGGAGGGG
Product: GTP-binding protein Era
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MLAQALSSRAAAGAVPDTPPVETQRCGLIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGVRTVGATQFVFVD TPGFQTRHGNALNRSLNRTVVGAVNDVDLIVFVVEAGQFNLADAKVLALLPAKTPAILLANKFDLIYRRAELAPWLRSMQ ERHNFAEFVPMSANNAKDIERLFGICEKYLPVQPWMYRADELTDRSDRFMAAEIIREKLFRLTGDELPYTSTVIIDKYEE EGNLRRIAATIVVERDGHKGMVIGEKGEKLKRIGTESRHELETLTGNKVFLEIWVKVRSGWADDEARVKTFGYE
Sequences:
>Translated_314_residues MLAQALSSRAAAGAVPDTPPVETQRCGLIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGVRTVGATQFVFVD TPGFQTRHGNALNRSLNRTVVGAVNDVDLIVFVVEAGQFNLADAKVLALLPAKTPAILLANKFDLIYRRAELAPWLRSMQ ERHNFAEFVPMSANNAKDIERLFGICEKYLPVQPWMYRADELTDRSDRFMAAEIIREKLFRLTGDELPYTSTVIIDKYEE EGNLRRIAATIVVERDGHKGMVIGEKGEKLKRIGTESRHELETLTGNKVFLEIWVKVRSGWADDEARVKTFGYE >Mature_314_residues MLAQALSSRAAAGAVPDTPPVETQRCGLIAIVGKPNVGKSTLLNALVGQKISITSRKAQTTRHRITGVRTVGATQFVFVD TPGFQTRHGNALNRSLNRTVVGAVNDVDLIVFVVEAGQFNLADAKVLALLPAKTPAILLANKFDLIYRRAELAPWLRSMQ ERHNFAEFVPMSANNAKDIERLFGICEKYLPVQPWMYRADELTDRSDRFMAAEIIREKLFRLTGDELPYTSTVIIDKYEE EGNLRRIAATIVVERDGHKGMVIGEKGEKLKRIGTESRHELETLTGNKVFLEIWVKVRSGWADDEARVKTFGYE
Specific function: An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism [H]
COG id: COG1159
COG function: function code R; GTPase
Gene ontology:
Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 KH type-2 domain [H]
Homologues:
Organism=Homo sapiens, GI24307899, Length=323, Percent_Identity=28.1733746130031, Blast_Score=89, Evalue=7e-18, Organism=Escherichia coli, GI1788919, Length=296, Percent_Identity=48.6486486486487, Blast_Score=281, Evalue=4e-77, Organism=Drosophila melanogaster, GI24646434, Length=310, Percent_Identity=26.1290322580645, Blast_Score=97, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005662 - InterPro: IPR006073 - InterPro: IPR015946 - InterPro: IPR009019 - InterPro: IPR004044 - InterPro: IPR002917 - InterPro: IPR005225 [H]
Pfam domain/function: PF07650 KH_2; PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 35037; Mature: 35037
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS50823 KH_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAQALSSRAAAGAVPDTPPVETQRCGLIAIVGKPNVGKSTLLNALVGQKISITSRKAQT CCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEECCHHHHH TRHRITGVRTVGATQFVFVDTPGFQTRHGNALNRSLNRTVVGAVNDVDLIVFVVEAGQFN HHHHHHEEEEECCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCCEEEEEEEECCCCC LADAKVLALLPAKTPAILLANKFDLIYRRAELAPWLRSMQERHNFAEFVPMSANNAKDIE CCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCHHHHH RLFGICEKYLPVQPWMYRADELTDRSDRFMAAEIIREKLFRLTGDELPYTSTVIIDKYEE HHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC EGNLRRIAATIVVERDGHKGMVIGEKGEKLKRIGTESRHELETLTGNKVFLEIWVKVRSG CCCEEEEEEEEEEEECCCCCEEECCCCHHHHHCCCCCHHHHHHHCCCEEEEEEEEEHHCC WADDEARVKTFGYE CCCCCCCEEECCCC >Mature Secondary Structure MLAQALSSRAAAGAVPDTPPVETQRCGLIAIVGKPNVGKSTLLNALVGQKISITSRKAQT CCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEECCHHHHH TRHRITGVRTVGATQFVFVDTPGFQTRHGNALNRSLNRTVVGAVNDVDLIVFVVEAGQFN HHHHHHEEEEECCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCCEEEEEEEECCCCC LADAKVLALLPAKTPAILLANKFDLIYRRAELAPWLRSMQERHNFAEFVPMSANNAKDIE CCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCHHHHH RLFGICEKYLPVQPWMYRADELTDRSDRFMAAEIIREKLFRLTGDELPYTSTVIIDKYEE HHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC EGNLRRIAATIVVERDGHKGMVIGEKGEKLKRIGTESRHELETLTGNKVFLEIWVKVRSG CCCEEEEEEEEEEEECCCCCEEECCCCHHHHHCCCCCHHHHHHHCCCEEEEEEEEEHHCC WADDEARVKTFGYE CCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]