| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is argD1 [H]
Identifier: 91789426
GI number: 91789426
Start: 3771916
End: 3773130
Strand: Direct
Name: argD1 [H]
Synonym: Bpro_3572
Alternate gene names: 91789426
Gene position: 3771916-3773130 (Clockwise)
Preceding gene: 91789424
Following gene: 91789427
Centisome position: 72.53
GC content: 64.2
Gene sequence:
>1215_bases ATGAACGCAGCCCTGCCCCAGCCCATCGAAGCCGCCTCACCCCACGTCATGAACACCTATGGCCGCCTGCCCATCGCGTT GTCGCATGGCCAAGGTTGCCGCGTCTGGGACGTCAACGGCAAGTCCTACCTGGACGCGCTGGGCGGTATTGCCGTGAACA CCGTCGGCCACAACCACCCGAAACTGGTGCCCGCGCTGCAGGAGCAGATCGGCCGGCTGATCCATACCTCCAACTACTAC CATGTGCCGCTGCAGGAAACGCTGGCGGCCAAACTGGTGGAGCTGTCGGGCCTGGAGAACGTATTTTTCTGCTCCACCGG CCTTGAAGCCAACGAGGCCGCGTTGAAACTGGCGCGCAAGTTCGGCCATGACAAGGGCATCGAGAGGCCGGAGATCGTGG TCTATGAAAAAGCCTTCCATGGCCGCAGCATCGCCACCCTGAGCGCCACCGGCAACCCCAAGGTGCAAGCCGGCTTTGGC CCGCTGGTCGAAGGTTTCATCCGTGTGCCGCTCAACGACCTGGAGGCCCTGAAGGCCGCCACGGTCGGCAACCCCAACGT GGTCGCCGTGTTCTTTGAAGCCATCCAGGGGGAAGGCGGCATCAACAGTATGAAGGACGAGTACCTGCGGGAGGTGCGCG CCCTCTGCGACGAGCGCGACTGGCTGCTCATGATCGACGAAGTGCAGTGCGGCATGGGCCGTACCGGCAAATGGTTTGCC CACCAGTGGTCCGGTATCAAGCCCGATGTCATGCCGCTGGCCAAGGGGCTGGGATCGGGCGTGCCGATCGGCGCGGTGGT GGCCGGCCCCAAGGCTGCCCATATTTTTAGCCCCGGCAACCACGGCTCGACCTTTGGCGGCAATCCGCTGGCCATGCGCG CCGGCGTGGAAACCCTGCGCATCATGGAAGAAGAAGGCCTGCTGGCCAATGCGGTCAAGGTGGGCGACCACCTGCGGGCG GCGCTGACGCGCGAGCTGGCCGACGAGCCGGGCTTGAAGGAAATCCGCGGCCGCGGCCTGATGCTGGGCATTGAGCTGAC CAAGCCTTGCGGGGAACTGCTTGCCCGCGCTGCCGAGAAAGGCCTGCTGCTGAGCGTGACGGCCGACACCGTGATCCGCC TGGTGCCGTCGCTGATCATGACCACCGCCGAAGCCGATGAAGTCGTGGCGATTGTGGTCCCGCTGATCAAGCAGTTATTG AAAGAGAAAGCATGA
Upstream 100 bases:
>100_bases CTATCGTCACAAAAGCCCGCAAAGTCTGCGCCTAAAATTGCCGCATGCCCGTCGGCTTCCCGGCGGCCGCCTGTTCCCTG CCTTGCCCGGAGTTTTTGCC
Downstream 100 bases:
>100_bases CCAAGAGCGCGACCAAGGCAACGAAATCCGGGGCCGGCGAATCAGCCGAAGCGAAAAGCACCGCGGCCAGGCCCATCAGA CACTACCTGCAGTTCAGCGA
Product: acetylornithine aminotransferase
Products: NA
Alternate protein names: ACOAT 1 [H]
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MNAALPQPIEAASPHVMNTYGRLPIALSHGQGCRVWDVNGKSYLDALGGIAVNTVGHNHPKLVPALQEQIGRLIHTSNYY HVPLQETLAAKLVELSGLENVFFCSTGLEANEAALKLARKFGHDKGIERPEIVVYEKAFHGRSIATLSATGNPKVQAGFG PLVEGFIRVPLNDLEALKAATVGNPNVVAVFFEAIQGEGGINSMKDEYLREVRALCDERDWLLMIDEVQCGMGRTGKWFA HQWSGIKPDVMPLAKGLGSGVPIGAVVAGPKAAHIFSPGNHGSTFGGNPLAMRAGVETLRIMEEEGLLANAVKVGDHLRA ALTRELADEPGLKEIRGRGLMLGIELTKPCGELLARAAEKGLLLSVTADTVIRLVPSLIMTTAEADEVVAIVVPLIKQLL KEKA
Sequences:
>Translated_404_residues MNAALPQPIEAASPHVMNTYGRLPIALSHGQGCRVWDVNGKSYLDALGGIAVNTVGHNHPKLVPALQEQIGRLIHTSNYY HVPLQETLAAKLVELSGLENVFFCSTGLEANEAALKLARKFGHDKGIERPEIVVYEKAFHGRSIATLSATGNPKVQAGFG PLVEGFIRVPLNDLEALKAATVGNPNVVAVFFEAIQGEGGINSMKDEYLREVRALCDERDWLLMIDEVQCGMGRTGKWFA HQWSGIKPDVMPLAKGLGSGVPIGAVVAGPKAAHIFSPGNHGSTFGGNPLAMRAGVETLRIMEEEGLLANAVKVGDHLRA ALTRELADEPGLKEIRGRGLMLGIELTKPCGELLARAAEKGLLLSVTADTVIRLVPSLIMTTAEADEVVAIVVPLIKQLL KEKA >Mature_404_residues MNAALPQPIEAASPHVMNTYGRLPIALSHGQGCRVWDVNGKSYLDALGGIAVNTVGHNHPKLVPALQEQIGRLIHTSNYY HVPLQETLAAKLVELSGLENVFFCSTGLEANEAALKLARKFGHDKGIERPEIVVYEKAFHGRSIATLSATGNPKVQAGFG PLVEGFIRVPLNDLEALKAATVGNPNVVAVFFEAIQGEGGINSMKDEYLREVRALCDERDWLLMIDEVQCGMGRTGKWFA HQWSGIKPDVMPLAKGLGSGVPIGAVVAGPKAAHIFSPGNHGSTFGGNPLAMRAGVETLRIMEEEGLLANAVKVGDHLRA ALTRELADEPGLKEIRGRGLMLGIELTKPCGELLARAAEKGLLLSVTADTVIRLVPSLIMTTAEADEVVAIVVPLIKQLL KEKA
Specific function: Involved In Both The Arginine And Lysine Biosynthetic Pathways. [C]
COG id: COG4992
COG function: function code E; Ornithine/acetylornithine aminotransferase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily [H]
Homologues:
Organism=Homo sapiens, GI4557809, Length=383, Percent_Identity=36.5535248041775, Blast_Score=240, Evalue=1e-63, Organism=Homo sapiens, GI284507298, Length=296, Percent_Identity=37.8378378378378, Blast_Score=187, Evalue=1e-47, Organism=Homo sapiens, GI13994255, Length=450, Percent_Identity=30.2222222222222, Blast_Score=166, Evalue=4e-41, Organism=Homo sapiens, GI37574042, Length=412, Percent_Identity=28.8834951456311, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI24119277, Length=408, Percent_Identity=28.4313725490196, Blast_Score=129, Evalue=7e-30, Organism=Homo sapiens, GI226442705, Length=412, Percent_Identity=28.1553398058252, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI226442709, Length=381, Percent_Identity=28.3464566929134, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI188536080, Length=423, Percent_Identity=25.0591016548463, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI38679950, Length=423, Percent_Identity=25.0591016548463, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI38679946, Length=423, Percent_Identity=25.0591016548463, Blast_Score=94, Evalue=2e-19, Organism=Escherichia coli, GI1789759, Length=368, Percent_Identity=42.1195652173913, Blast_Score=267, Evalue=1e-72, Organism=Escherichia coli, GI1788044, Length=388, Percent_Identity=37.8865979381443, Blast_Score=255, Evalue=3e-69, Organism=Escherichia coli, GI145693181, Length=369, Percent_Identity=38.2113821138211, Blast_Score=216, Evalue=3e-57, Organism=Escherichia coli, GI1789016, Length=402, Percent_Identity=33.3333333333333, Blast_Score=196, Evalue=2e-51, Organism=Escherichia coli, GI1787560, Length=386, Percent_Identity=34.9740932642487, Blast_Score=194, Evalue=9e-51, Organism=Escherichia coli, GI1786991, Length=377, Percent_Identity=28.9124668435013, Blast_Score=115, Evalue=7e-27, Organism=Escherichia coli, GI1786349, Length=347, Percent_Identity=29.6829971181556, Blast_Score=114, Evalue=1e-26, Organism=Caenorhabditis elegans, GI25144271, Length=391, Percent_Identity=37.3401534526854, Blast_Score=251, Evalue=4e-67, Organism=Caenorhabditis elegans, GI32564660, Length=457, Percent_Identity=31.2910284463895, Blast_Score=181, Evalue=6e-46, Organism=Caenorhabditis elegans, GI25144274, Length=274, Percent_Identity=36.1313868613139, Blast_Score=173, Evalue=2e-43, Organism=Caenorhabditis elegans, GI71992977, Length=372, Percent_Identity=29.5698924731183, Blast_Score=142, Evalue=2e-34, Organism=Caenorhabditis elegans, GI71981843, Length=161, Percent_Identity=42.8571428571429, Blast_Score=125, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17541228, Length=462, Percent_Identity=24.025974025974, Blast_Score=87, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6324432, Length=378, Percent_Identity=37.3015873015873, Blast_Score=245, Evalue=9e-66, Organism=Saccharomyces cerevisiae, GI6323470, Length=416, Percent_Identity=34.1346153846154, Blast_Score=208, Evalue=1e-54, Organism=Saccharomyces cerevisiae, GI6321456, Length=425, Percent_Identity=25.6470588235294, Blast_Score=92, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6324386, Length=354, Percent_Identity=26.5536723163842, Blast_Score=83, Evalue=9e-17, Organism=Drosophila melanogaster, GI21357415, Length=381, Percent_Identity=36.4829396325459, Blast_Score=243, Evalue=1e-64, Organism=Drosophila melanogaster, GI28574759, Length=447, Percent_Identity=29.082774049217, Blast_Score=175, Evalue=6e-44, Organism=Drosophila melanogaster, GI161085790, Length=377, Percent_Identity=30.7692307692308, Blast_Score=167, Evalue=1e-41, Organism=Drosophila melanogaster, GI21356575, Length=428, Percent_Identity=28.0373831775701, Blast_Score=141, Evalue=8e-34, Organism=Drosophila melanogaster, GI281366494, Length=414, Percent_Identity=25.8454106280193, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI24667139, Length=414, Percent_Identity=25.8454106280193, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI24667143, Length=414, Percent_Identity=25.8454106280193, Blast_Score=99, Evalue=7e-21,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004636 - InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.11 [H]
Molecular weight: Translated: 43205; Mature: 43205
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAALPQPIEAASPHVMNTYGRLPIALSHGQGCRVWDVNGKSYLDALGGIAVNTVGHNHP CCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEECCCHHHHHHHCCEEEECCCCCCC KLVPALQEQIGRLIHTSNYYHVPLQETLAAKLVELSGLENVFFCSTGLEANEAALKLARK CHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH FGHDKGIERPEIVVYEKAFHGRSIATLSATGNPKVQAGFGPLVEGFIRVPLNDLEALKAA HCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEECCCCHHHHHHHHCCCHHHHHHHHH TVGNPNVVAVFFEAIQGEGGINSMKDEYLREVRALCDERDWLLMIDEVQCGMGRTGKWFA CCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH HQWSGIKPDVMPLAKGLGSGVPIGAVVAGPKAAHIFSPGNHGSTFGGNPLAMRAGVETLR HHCCCCCCHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCEEHHHCHHHHH IMEEEGLLANAVKVGDHLRAALTRELADEPGLKEIRGRGLMLGIELTKPCGELLARAAEK HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEECCHHHHHHHHHHHC GLLLSVTADTVIRLVPSLIMTTAEADEVVAIVVPLIKQLLKEKA CEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNAALPQPIEAASPHVMNTYGRLPIALSHGQGCRVWDVNGKSYLDALGGIAVNTVGHNHP CCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEECCCHHHHHHHCCEEEECCCCCCC KLVPALQEQIGRLIHTSNYYHVPLQETLAAKLVELSGLENVFFCSTGLEANEAALKLARK CHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH FGHDKGIERPEIVVYEKAFHGRSIATLSATGNPKVQAGFGPLVEGFIRVPLNDLEALKAA HCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEECCCCHHHHHHHHCCCHHHHHHHHH TVGNPNVVAVFFEAIQGEGGINSMKDEYLREVRALCDERDWLLMIDEVQCGMGRTGKWFA CCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH HQWSGIKPDVMPLAKGLGSGVPIGAVVAGPKAAHIFSPGNHGSTFGGNPLAMRAGVETLR HHCCCCCCHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCEEHHHCHHHHH IMEEEGLLANAVKVGDHLRAALTRELADEPGLKEIRGRGLMLGIELTKPCGELLARAAEK HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEECCHHHHHHHHHHHC GLLLSVTADTVIRLVPSLIMTTAEADEVVAIVVPLIKQLLKEKA CEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]