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The map label for this gene is ybbK [C]

Identifier: 91789401

GI number: 91789401

Start: 3747118

End: 3747903

Strand: Reverse

Name: ybbK [C]

Synonym: Bpro_3547

Alternate gene names: 91789401

Gene position: 3747903-3747118 (Counterclockwise)

Preceding gene: 91789402

Following gene: 91789399

Centisome position: 72.07

GC content: 59.92

Gene sequence:

>786_bases
ATGAACATCGAATTTGGCTTGTTGGGCGGTGGCCTTGTTGTGCTCCTGGCCATCGCTTTTTTGTTTCAAGCGGTGCGCAT
CTTCCGCGAGTACGAGCGCGGCGTTGTCTTTACCCTCGGGCGCTTCTGGCAGGTCAAGGGGCCGGGTCTGGTCATCATCA
TCCCGATCATCCAGCAGGTGGTGCGGGTGGACCTGCGCACCGTGGTGCTGGAAGTCCCGACCCAGGACGTCATCTCGCGC
GACAACGTGTCGGTCAAAGTCAGCGCGGTCGTCTACCTGCGCGTCATCGACCCGCAAAAGGCCATCATCCAGGTCGTTGA
TTACCTCAATGCCACCAGCCAGCTTGCCCAGACCATGTTGCGGTCGGTGCTGGGAAAGCACCAGCTCGACGACATGCTGG
CTGAGCGGGAGAAGCTGAACATGGATGTCCAGCAGGCGCTCGATGCGCAGACCGATTCCTGGGGCATCAAGGTCAGCAAT
GTTGAGATCAAGCAGGTCGACCTGACAGAGTCCATGATCCGGGCGATCGCGCGGCAGGCGGAAGCGGAGCGTGAACGCCG
CGCCAAGGTGATACACGCCGAGGGCGAACTGCAGGCTTCCGAGAAGCTGTTCCAGGCGGCCAAAATCCTCGCGCAGGAGC
CGCAGGCGATCCAGTTGCGTTATCTGGAAACACTGACGGTCATTGGTGCGGACAAGAATACGACCATCGTTTTCCCGCTT
CCCCTTGATCTGTTGACGCCTTTCCTGGCAAGACTGAAGCAGGGCGCAGACAAGTCGACCTCCTGA

Upstream 100 bases:

>100_bases
GCGCGAACACTCCACTCGGTATCGGTGAATCAGTCAGGGTGGTCGGCATCAACGGGCTGGTGCTGACCGTCGAGCCCACC
CGCCTGGAAGGAGACGAAAA

Downstream 100 bases:

>100_bases
TTTTCTTTTGCCCAGCCGCGCTTCGCCCGGTTCGCCCGGGTTACCCCAACTTCGGCAGCTCAAAGACCAGGCAGGTTGTC
GTGGCATGCGCATACAGCTT

Product: SPFH domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MNIEFGLLGGGLVVLLAIAFLFQAVRIFREYERGVVFTLGRFWQVKGPGLVIIIPIIQQVVRVDLRTVVLEVPTQDVISR
DNVSVKVSAVVYLRVIDPQKAIIQVVDYLNATSQLAQTMLRSVLGKHQLDDMLAEREKLNMDVQQALDAQTDSWGIKVSN
VEIKQVDLTESMIRAIARQAEAERERRAKVIHAEGELQASEKLFQAAKILAQEPQAIQLRYLETLTVIGADKNTTIVFPL
PLDLLTPFLARLKQGADKSTS

Sequences:

>Translated_261_residues
MNIEFGLLGGGLVVLLAIAFLFQAVRIFREYERGVVFTLGRFWQVKGPGLVIIIPIIQQVVRVDLRTVVLEVPTQDVISR
DNVSVKVSAVVYLRVIDPQKAIIQVVDYLNATSQLAQTMLRSVLGKHQLDDMLAEREKLNMDVQQALDAQTDSWGIKVSN
VEIKQVDLTESMIRAIARQAEAERERRAKVIHAEGELQASEKLFQAAKILAQEPQAIQLRYLETLTVIGADKNTTIVFPL
PLDLLTPFLARLKQGADKSTS
>Mature_261_residues
MNIEFGLLGGGLVVLLAIAFLFQAVRIFREYERGVVFTLGRFWQVKGPGLVIIIPIIQQVVRVDLRTVVLEVPTQDVISR
DNVSVKVSAVVYLRVIDPQKAIIQVVDYLNATSQLAQTMLRSVLGKHQLDDMLAEREKLNMDVQQALDAQTDSWGIKVSN
VEIKQVDLTESMIRAIARQAEAERERRAKVIHAEGELQASEKLFQAAKILAQEPQAIQLRYLETLTVIGADKNTTIVFPL
PLDLLTPFLARLKQGADKSTS

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=250, Percent_Identity=45.6, Blast_Score=202, Evalue=2e-52,
Organism=Homo sapiens, GI221316744, Length=256, Percent_Identity=44.140625, Blast_Score=197, Evalue=9e-51,
Organism=Homo sapiens, GI21686995, Length=256, Percent_Identity=44.140625, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI7657615, Length=238, Percent_Identity=36.1344537815126, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI7305503, Length=188, Percent_Identity=38.2978723404255, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI20149563, Length=152, Percent_Identity=34.8684210526316, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI38016907, Length=57, Percent_Identity=59.6491228070175, Blast_Score=76, Evalue=3e-14,
Organism=Escherichia coli, GI1786697, Length=189, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17569493, Length=236, Percent_Identity=46.1864406779661, Blast_Score=210, Evalue=5e-55,
Organism=Caenorhabditis elegans, GI193209764, Length=236, Percent_Identity=46.1864406779661, Blast_Score=209, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI71987612, Length=265, Percent_Identity=44.5283018867925, Blast_Score=205, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI71987621, Length=265, Percent_Identity=44.5283018867925, Blast_Score=204, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI25153583, Length=257, Percent_Identity=45.5252918287938, Blast_Score=204, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17569497, Length=227, Percent_Identity=45.374449339207, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17569499, Length=241, Percent_Identity=45.643153526971, Blast_Score=192, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17570459, Length=242, Percent_Identity=42.9752066115703, Blast_Score=191, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI71989948, Length=238, Percent_Identity=44.1176470588235, Blast_Score=182, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI17570161, Length=243, Percent_Identity=42.798353909465, Blast_Score=181, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI193210507, Length=243, Percent_Identity=42.798353909465, Blast_Score=181, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=214, Percent_Identity=44.8598130841121, Blast_Score=164, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI71989955, Length=183, Percent_Identity=44.8087431693989, Blast_Score=137, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI32564147, Length=168, Percent_Identity=38.6904761904762, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI71989963, Length=121, Percent_Identity=44.6280991735537, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17542664, Length=157, Percent_Identity=28.0254777070064, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI45556022, Length=242, Percent_Identity=48.7603305785124, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI18860517, Length=250, Percent_Identity=46.8, Blast_Score=211, Evalue=5e-55,
Organism=Drosophila melanogaster, GI24657857, Length=250, Percent_Identity=47.6, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI62484448, Length=250, Percent_Identity=47.6, Blast_Score=201, Evalue=5e-52,
Organism=Drosophila melanogaster, GI281365664, Length=250, Percent_Identity=47.6, Blast_Score=200, Evalue=6e-52,
Organism=Drosophila melanogaster, GI62484274, Length=250, Percent_Identity=47.6, Blast_Score=200, Evalue=7e-52,
Organism=Drosophila melanogaster, GI21356845, Length=243, Percent_Identity=37.037037037037, Blast_Score=185, Evalue=3e-47,
Organism=Drosophila melanogaster, GI281361631, Length=240, Percent_Identity=39.1666666666667, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI281361633, Length=240, Percent_Identity=39.1666666666667, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI28573263, Length=236, Percent_Identity=39.8305084745763, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI281361635, Length=186, Percent_Identity=38.7096774193548, Blast_Score=146, Evalue=2e-35,
Organism=Drosophila melanogaster, GI45550506, Length=188, Percent_Identity=36.7021276595745, Blast_Score=125, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29141; Mature: 29141

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEFGLLGGGLVVLLAIAFLFQAVRIFREYERGVVFTLGRFWQVKGPGLVIIIPIIQQV
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCEEEEHHHHHHH
VRVDLRTVVLEVPTQDVISRDNVSVKVSAVVYLRVIDPQKAIIQVVDYLNATSQLAQTML
HHHHHHHHHEECCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHCHHHHHHHHHH
RSVLGKHQLDDMLAEREKLNMDVQQALDAQTDSWGIKVSNVEIKQVDLTESMIRAIARQA
HHHHCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECEEEEEEHHHHHHHHHHHHHH
EAERERRAKVIHAEGELQASEKLFQAAKILAQEPQAIQLRYLETLTVIGADKNTTIVFPL
HHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECCCCCEEEEEC
PLDLLTPFLARLKQGADKSTS
CHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNIEFGLLGGGLVVLLAIAFLFQAVRIFREYERGVVFTLGRFWQVKGPGLVIIIPIIQQV
CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCCCEEEEHHHHHHH
VRVDLRTVVLEVPTQDVISRDNVSVKVSAVVYLRVIDPQKAIIQVVDYLNATSQLAQTML
HHHHHHHHHEECCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHCHHHHHHHHHH
RSVLGKHQLDDMLAEREKLNMDVQQALDAQTDSWGIKVSNVEIKQVDLTESMIRAIARQA
HHHHCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCEEEECEEEEEEHHHHHHHHHHHHHH
EAERERRAKVIHAEGELQASEKLFQAAKILAQEPQAIQLRYLETLTVIGADKNTTIVFPL
HHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECCCCCEEEEEC
PLDLLTPFLARLKQGADKSTS
CHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]