| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91789399
Identifier: 91789399
GI number: 91789399
Start: 3745995
End: 3746480
Strand: Reverse
Name: 91789399
Synonym: Bpro_3545
Alternate gene names: NA
Gene position: 3746480-3745995 (Counterclockwise)
Preceding gene: 91789401
Following gene: 91789398
Centisome position: 72.04
GC content: 60.29
Gene sequence:
>486_bases ATGAGCGATAAATCATCCCTGTCAATCGAAGCCGAATTGAAAGCCCAGGGTTGCACCAACCTGAGGCTGCGCCAGCTGAT GCGGCGCGTGGCCCAGCACTATGACCTTGAAATGGCCAAGGCGGGGCTCAAGACCACGCAGTACTCGCTGCTGAGCCATG TTTTGAAACTAGGCCCCCTGCGTCCCGGTGAACTGGCGCAGAGCATGAAGTTCAGTGCCTCCACTCTCACGCGCAACCTC AAGCCGCTGATTGACGCGGGCTGGGTCGAGCTGGCGGCCGGCACCGATGCGCGCAGCCGCATTGTGACCATCACGCCGGC AGGTCGCGCCAAACGTGAAGAGGCCCGCCTGCGCTGGAAGGTCGCGCAGGAAAGCCTGAACCAGCGGTTGGGCGTCGCAC GTGTGCTGGCCTTGCACCGGCTGATCAATGAATCGCTTGAACTCTTGTCTCCCACTGAACCTGGAACTGGAACTGATGAT GAATAA
Upstream 100 bases:
>100_bases GCACGGCTGCGCTTTGTTCCTGCCATTGTGTCAACGTGTCTTGTGGGGTCTTTGTGTTCATTTAATTTGTATATGCAATA ATTGTAGGTACAATCAAATT
Downstream 100 bases:
>100_bases GCCCCAAACCGCTGGCCCGCGCAAGGCCGCACTCTGGCTGGTGCTGCTGGCAGCCGGCGGCGCCTTTGCCCTGACGATGG GTGTGCGCCAGACCATGGGC
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MarR Family; Regulatory Protein MarR; Transcriptional Regulator; MarR-Family Transcriptional Regulator; Transcription Regulator Protein; MarR Family Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator Marr Family
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MSDKSSLSIEAELKAQGCTNLRLRQLMRRVAQHYDLEMAKAGLKTTQYSLLSHVLKLGPLRPGELAQSMKFSASTLTRNL KPLIDAGWVELAAGTDARSRIVTITPAGRAKREEARLRWKVAQESLNQRLGVARVLALHRLINESLELLSPTEPGTGTDD E
Sequences:
>Translated_161_residues MSDKSSLSIEAELKAQGCTNLRLRQLMRRVAQHYDLEMAKAGLKTTQYSLLSHVLKLGPLRPGELAQSMKFSASTLTRNL KPLIDAGWVELAAGTDARSRIVTITPAGRAKREEARLRWKVAQESLNQRLGVARVLALHRLINESLELLSPTEPGTGTDD E >Mature_160_residues SDKSSLSIEAELKAQGCTNLRLRQLMRRVAQHYDLEMAKAGLKTTQYSLLSHVLKLGPLRPGELAQSMKFSASTLTRNLK PLIDAGWVELAAGTDARSRIVTITPAGRAKREEARLRWKVAQESLNQRLGVARVLALHRLINESLELLSPTEPGTGTDDE
Specific function: Unknown
COG id: COG1846
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17801; Mature: 17670
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKSSLSIEAELKAQGCTNLRLRQLMRRVAQHYDLEMAKAGLKTTQYSLLSHVLKLGPL CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHCCC RPGELAQSMKFSASTLTRNLKPLIDAGWVELAAGTDARSRIVTITPAGRAKREEARLRWK CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCEEEEECCCCCCHHHHHHHHHH VAQESLNQRLGVARVLALHRLINESLELLSPTEPGTGTDDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SDKSSLSIEAELKAQGCTNLRLRQLMRRVAQHYDLEMAKAGLKTTQYSLLSHVLKLGPL CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHCCC RPGELAQSMKFSASTLTRNLKPLIDAGWVELAAGTDARSRIVTITPAGRAKREEARLRWK CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCEEEEECCCCCCHHHHHHHHHH VAQESLNQRLGVARVLALHRLINESLELLSPTEPGTGTDDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA