| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789393
Identifier: 91789393
GI number: 91789393
Start: 3740218
End: 3740658
Strand: Reverse
Name: 91789393
Synonym: Bpro_3539
Alternate gene names: NA
Gene position: 3740658-3740218 (Counterclockwise)
Preceding gene: 91789395
Following gene: 91789392
Centisome position: 71.93
GC content: 57.14
Gene sequence:
>441_bases ATGAAAGACGTTGCACAAATCCTCAAGTCGAAGGCAGATCACAAGGTCTACACCGTTTCACCGTTGGCGCCGGTGCTGGA TGCCGTCAAGTTGATGGCGGAGAAGAACCTCGGTGCGCTCCTGGTGTTGGACGGCGAAGAGTTCGTGGGCATCATCAGCG AACGCGATTGCACGCGGAAAATGCTCCTGGCGGACCGCTTGCCCAGGGAAACGCCGGTGCGCGACATCATGAGTTCACCG GTGCAGTACGTGGGCCCCCGCCATACCAACGAGGAATGCATGGCGCTGATGACAGACAAGCGCCTTCGCCACTTACCCGT CATAGACAACGGCAAGCTCATCGGCCTGGTTTCCATCGGTGATCTGGTCAAGGACATCATTTCCGAGCAGGGTTTCATCA TCCAGCAGCTCGAACACTACATTGCGGGCGTAAAAGGCTGA
Upstream 100 bases:
>100_bases ACTGGGTCACCGTGGCGGATGCGCTGCGGGTGATCGGCGTGAGCGCTTTGTTCGGGTCGGGAAGCAGCTCATCCGCACTG CAGACCACGAAGGAATAACC
Downstream 100 bases:
>100_bases CGGATCATCCGGCGACGGGCGAGTAGTGCTCCGGGCCCCAGGGCCTGCCTTTTCAGGACCCGGGCAATCGGGATCGCGCA ATGGGGCCGTCCGCATGAAC
Product: signal-transduction protein
Products: NA
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 146; Mature: 146
Protein sequence:
>146_residues MKDVAQILKSKADHKVYTVSPLAPVLDAVKLMAEKNLGALLVLDGEEFVGIISERDCTRKMLLADRLPRETPVRDIMSSP VQYVGPRHTNEECMALMTDKRLRHLPVIDNGKLIGLVSIGDLVKDIISEQGFIIQQLEHYIAGVKG
Sequences:
>Translated_146_residues MKDVAQILKSKADHKVYTVSPLAPVLDAVKLMAEKNLGALLVLDGEEFVGIISERDCTRKMLLADRLPRETPVRDIMSSP VQYVGPRHTNEECMALMTDKRLRHLPVIDNGKLIGLVSIGDLVKDIISEQGFIIQQLEHYIAGVKG >Mature_146_residues MKDVAQILKSKADHKVYTVSPLAPVLDAVKLMAEKNLGALLVLDGEEFVGIISERDCTRKMLLADRLPRETPVRDIMSSP VQYVGPRHTNEECMALMTDKRLRHLPVIDNGKLIGLVSIGDLVKDIISEQGFIIQQLEHYIAGVKG
Specific function: Unknown
COG id: COG0517
COG function: function code R; FOG: CBS domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 [H]
Pfam domain/function: PF00571 CBS [H]
EC number: NA
Molecular weight: Translated: 16202; Mature: 16202
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDVAQILKSKADHKVYTVSPLAPVLDAVKLMAEKNLGALLVLDGEEFVGIISERDCTRK CHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCHHHHH MLLADRLPRETPVRDIMSSPVQYVGPRHTNEECMALMTDKRLRHLPVIDNGKLIGLVSIG HHHHHHCCCCCCHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHH DLVKDIISEQGFIIQQLEHYIAGVKG HHHHHHHHCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MKDVAQILKSKADHKVYTVSPLAPVLDAVKLMAEKNLGALLVLDGEEFVGIISERDCTRK CHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCHHHHH MLLADRLPRETPVRDIMSSPVQYVGPRHTNEECMALMTDKRLRHLPVIDNGKLIGLVSIG HHHHHHCCCCCCHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHH DLVKDIISEQGFIIQQLEHYIAGVKG HHHHHHHHCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA