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The map label for this gene is cph1 [H]

Identifier: 91789365

GI number: 91789365

Start: 3713145

End: 3714299

Strand: Direct

Name: cph1 [H]

Synonym: Bpro_3511

Alternate gene names: 91789365

Gene position: 3713145-3714299 (Clockwise)

Preceding gene: 91789364

Following gene: 91789366

Centisome position: 71.4

GC content: 65.28

Gene sequence:

>1155_bases
ATGACGCCAGCCACACTTCTTATCGTGGAAGACCAGGCGGTCGTCGCGGCCGATCTGGGGGACCGCCTGGTACGCCATGG
CTACAAGGTGTGCGGCGTGGCCGCCTCGGGCGAGGAAGCGCTGGCCCTGGCGCACCAGCATCGGCCCCGGCTCGCGCTGA
TGGACATTCGGCTCCAGGGTGAAATGGACGGCATCCAGACCGCCGAGATGCTGCGGCACGAACTGGACCTGCCGGTGATC
TTCCTGAGCGCGCATTCCGACGAGCCGACACTCCAGCGGGCCAAGAACGCGGCGCCTTACGGCTTTCTCATGAAGCCCTT
CGATGAGCGCGAACTGCAACTTAACATCGAAGTGGCCCTGCACAAGCACGAGGGTGAACGCCAGCTCGCCGTCGCACATC
TGGAAATCCGTCACCTCAACGCCAGCCTCGAACAAGGTGTGCGCGAGCGGACGGCGGAACTGGAAGCGGCGCTGACGGAG
ATCGAGGGCCTCGTGCACGCCGTCGCGCATCACCTGCGCTCGCCGCTGCGGGCCATGGAAGGCTATTCGCATTTGCTGCT
GACCCGGTACGCCGCCAACCTTCCCGAGCCGGCCTCGCGATTTCCAGAAGTGATTGCCGGCAGTGCCCGGCGCATGGCGC
GCCTGGTGGACGACTTGCTCTCGTTCGTCAACCTGCGGCAACAGGCCTTGAGTCCCGCGCGCGTGGATATCGCCGCTGCC
GCACGCGAAGTCATGGGCGAGTTGATCGCCGCGCAACCCGGCCGCTCCGTGGACACCCACATCGAGGAACTGCCCGCCTG
CCAGGCCGACCCCGAACTACTGCGGCGGCTCCTGGTCGAGCTGCTCTCCAACGCGCTCAAGTTCAGCCGCGACCGCCAGC
CGGCGATCATCACGGTGGGTGTCCGGCCGGGCCCGGATCAGCCGGACCAGCATGTCTATTTCGTTCGCGACAACGGCATA
GGCTTCGACCCTCTCTATGCCGACAAGCTGTTCAAACTGTTCAGCCAACTGAATCTGCCCGAAGCCTACGAAGGCACCGG
CGCGGGACTGGCAATGGCCCTGCGTATCACCGAACGCATGGGTGGCCGCATCTGGGCGGAGTCATCTCCCGAGCAGGGCG
CCACGTTTTTCCTCAACCTTCCAAGCCCACCATGA

Upstream 100 bases:

>100_bases
GCCACGGTGGCCGGATGTTGGCCGAGAGCCAGCCTGATGCCGGCGCCACGTTTTTCTTCACCTTGCCGTCGAAGGCTCCC
GGCATGACGGCGGCCCTGCA

Downstream 100 bases:

>100_bases
GCATTTTCACGCTAGACATCTTGCTGGTTGAAGACAGTCGAAGTGACGTCGAGCTGTTCATGCTCGCCCATCAGGTGAAC
GGGTCGGCTGCGACCATCAG

Product: response regulator receiver sensor signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MTPATLLIVEDQAVVAADLGDRLVRHGYKVCGVAASGEEALALAHQHRPRLALMDIRLQGEMDGIQTAEMLRHELDLPVI
FLSAHSDEPTLQRAKNAAPYGFLMKPFDERELQLNIEVALHKHEGERQLAVAHLEIRHLNASLEQGVRERTAELEAALTE
IEGLVHAVAHHLRSPLRAMEGYSHLLLTRYAANLPEPASRFPEVIAGSARRMARLVDDLLSFVNLRQQALSPARVDIAAA
AREVMGELIAAQPGRSVDTHIEELPACQADPELLRRLLVELLSNALKFSRDRQPAIITVGVRPGPDQPDQHVYFVRDNGI
GFDPLYADKLFKLFSQLNLPEAYEGTGAGLAMALRITERMGGRIWAESSPEQGATFFLNLPSPP

Sequences:

>Translated_384_residues
MTPATLLIVEDQAVVAADLGDRLVRHGYKVCGVAASGEEALALAHQHRPRLALMDIRLQGEMDGIQTAEMLRHELDLPVI
FLSAHSDEPTLQRAKNAAPYGFLMKPFDERELQLNIEVALHKHEGERQLAVAHLEIRHLNASLEQGVRERTAELEAALTE
IEGLVHAVAHHLRSPLRAMEGYSHLLLTRYAANLPEPASRFPEVIAGSARRMARLVDDLLSFVNLRQQALSPARVDIAAA
AREVMGELIAAQPGRSVDTHIEELPACQADPELLRRLLVELLSNALKFSRDRQPAIITVGVRPGPDQPDQHVYFVRDNGI
GFDPLYADKLFKLFSQLNLPEAYEGTGAGLAMALRITERMGGRIWAESSPEQGATFFLNLPSPP
>Mature_383_residues
TPATLLIVEDQAVVAADLGDRLVRHGYKVCGVAASGEEALALAHQHRPRLALMDIRLQGEMDGIQTAEMLRHELDLPVIF
LSAHSDEPTLQRAKNAAPYGFLMKPFDERELQLNIEVALHKHEGERQLAVAHLEIRHLNASLEQGVRERTAELEAALTEI
EGLVHAVAHHLRSPLRAMEGYSHLLLTRYAANLPEPASRFPEVIAGSARRMARLVDDLLSFVNLRQQALSPARVDIAAAA
REVMGELIAAQPGRSVDTHIEELPACQADPELLRRLLVELLSNALKFSRDRQPAIITVGVRPGPDQPDQHVYFVRDNGIG
FDPLYADKLFKLFSQLNLPEAYEGTGAGLAMALRITERMGGRIWAESSPEQGATFFLNLPSPP

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081816, Length=274, Percent_Identity=27.3722627737226, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI48994928, Length=240, Percent_Identity=30, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI145693157, Length=291, Percent_Identity=25.7731958762887, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788549, Length=283, Percent_Identity=28.2685512367491, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786912, Length=222, Percent_Identity=30.1801801801802, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789149, Length=236, Percent_Identity=27.1186440677966, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790436, Length=221, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788550, Length=140, Percent_Identity=36.4285714285714, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 42385; Mature: 42254

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPATLLIVEDQAVVAADLGDRLVRHGYKVCGVAASGEEALALAHQHRPRLALMDIRLQG
CCCEEEEEEECCEEEHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEECC
EMDGIQTAEMLRHELDLPVIFLSAHSDEPTLQRAKNAAPYGFLMKPFDERELQLNIEVAL
CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEECCCCCCEEEEEEEEEE
HKHEGERQLAVAHLEIRHLNASLEQGVRERTAELEAALTEIEGLVHAVAHHLRSPLRAME
EECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYSHLLLTRYAANLPEPASRFPEVIAGSARRMARLVDDLLSFVNLRQQALSPARVDIAAA
HHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
AREVMGELIAAQPGRSVDTHIEELPACQADPELLRRLLVELLSNALKFSRDRQPAIITVG
HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
VRPGPDQPDQHVYFVRDNGIGFDPLYADKLFKLFSQLNLPEAYEGTGAGLAMALRITERM
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
GGRIWAESSPEQGATFFLNLPSPP
CCEEECCCCCCCCCEEEEECCCCC
>Mature Secondary Structure 
TPATLLIVEDQAVVAADLGDRLVRHGYKVCGVAASGEEALALAHQHRPRLALMDIRLQG
CCEEEEEEECCEEEHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEECC
EMDGIQTAEMLRHELDLPVIFLSAHSDEPTLQRAKNAAPYGFLMKPFDERELQLNIEVAL
CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEECCCCCCEEEEEEEEEE
HKHEGERQLAVAHLEIRHLNASLEQGVRERTAELEAALTEIEGLVHAVAHHLRSPLRAME
EECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYSHLLLTRYAANLPEPASRFPEVIAGSARRMARLVDDLLSFVNLRQQALSPARVDIAAA
HHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
AREVMGELIAAQPGRSVDTHIEELPACQADPELLRRLLVELLSNALKFSRDRQPAIITVG
HHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
VRPGPDQPDQHVYFVRDNGIGFDPLYADKLFKLFSQLNLPEAYEGTGAGLAMALRITERM
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
GGRIWAESSPEQGATFFLNLPSPP
CCEEECCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]