| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91789335
Identifier: 91789335
GI number: 91789335
Start: 3682395
End: 3683036
Strand: Direct
Name: 91789335
Synonym: Bpro_3481
Alternate gene names: NA
Gene position: 3682395-3683036 (Clockwise)
Preceding gene: 91789332
Following gene: 91789336
Centisome position: 70.81
GC content: 65.89
Gene sequence:
>642_bases ATGTCGGCCCACTGCTGCGACCACGACCAGAACGCCATGAACAGGGCCCTCAGCCCACGCTACAAAAAAATCCTGTGGAT CGCACTCGCCATCAACCTGGTCATGTTCGCCGTGGAGGTGGCCGCGGGCCTGCGTTCCGGCTCCGTGTCCCTGCTGGCTG ACGCGATTGATTTTTTTGGCGACGCAGCCAATTACGGCATCACGCTGGCGGTGCTGTCCGCAGGCCTGGTCTGGCGCGCC CGGGCGGCCCTGCTCAAGGGGGCCAGCATGCTGCTGTTTGGTGTGGTTGTGATGGGCAGGGCGCTGTGGATGGTCGCGCA AGGCGGCACACCCGAGGCGTTGACCATGGGTACCATCGGTTTGCTGGCACTGCTGGCCAATGGCGGGGTTGCCGCGATGC TGTACGCGTGGCGCGACGGAGACGCGAACATGCGTGGCGTCTGGCTCTGCACACGCAACGACGCCATCGGGAACATCGCG GTGATGCTGGCCGCGCTCGGCGTATTCGGCACCGGTACGGCCTGGCCCGACCTGGCGGTAGCGGCCGTGATGTCGGGACT GGCCATCACCAGCGGCTGGGCGGTGCTGCGGCATGCACTGCAGGAACTCAATATTGCCCGGTCCGCCGCCAGGCCAAGCT AA
Upstream 100 bases:
>100_bases TATCCCCGGCAAATGCGGGGCCATTCAGGCTGCTGGCTTGACCTTGAAGTGGGTCCAGGGTTTCCAATCTTGCCATCAAC CCTGAATTTGGAGAAGCCCC
Downstream 100 bases:
>100_bases ATACAGGCTGAAGCATTGAAGCTCAGCCCTGAAGTCCCCGCTTTGCGCCCAGGTTGCGCATTGATGAAGTTTGCAAGGAT TGGTGGAAGTTTTGTCTTTG
Product: cation efflux protein
Products: NA
Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Co/Zn/Cd Efflux System Membrane Component; Cation Efflux Permease; Cation Efflux System Permease; Cation Diffusion Facilitator Family Transporter; Heavy Metal Detoxification Protein; Cation Diffusion Facilitator; Transmembrane Protein; Cobalt-Zinc-Cadmium Resistance Protein; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; Integral Membrane Protein; Zinc Transporter; CDF Family Cobalt/Cadmium/Zinc Transporter
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MSAHCCDHDQNAMNRALSPRYKKILWIALAINLVMFAVEVAAGLRSGSVSLLADAIDFFGDAANYGITLAVLSAGLVWRA RAALLKGASMLLFGVVVMGRALWMVAQGGTPEALTMGTIGLLALLANGGVAAMLYAWRDGDANMRGVWLCTRNDAIGNIA VMLAALGVFGTGTAWPDLAVAAVMSGLAITSGWAVLRHALQELNIARSAARPS
Sequences:
>Translated_213_residues MSAHCCDHDQNAMNRALSPRYKKILWIALAINLVMFAVEVAAGLRSGSVSLLADAIDFFGDAANYGITLAVLSAGLVWRA RAALLKGASMLLFGVVVMGRALWMVAQGGTPEALTMGTIGLLALLANGGVAAMLYAWRDGDANMRGVWLCTRNDAIGNIA VMLAALGVFGTGTAWPDLAVAAVMSGLAITSGWAVLRHALQELNIARSAARPS >Mature_212_residues SAHCCDHDQNAMNRALSPRYKKILWIALAINLVMFAVEVAAGLRSGSVSLLADAIDFFGDAANYGITLAVLSAGLVWRAR AALLKGASMLLFGVVVMGRALWMVAQGGTPEALTMGTIGLLALLANGGVAAMLYAWRDGDANMRGVWLCTRNDAIGNIAV MLAALGVFGTGTAWPDLAVAAVMSGLAITSGWAVLRHALQELNIARSAARPS
Specific function: Unknown
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22227; Mature: 22096
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHCCDHDQNAMNRALSPRYKKILWIALAINLVMFAVEVAAGLRSGSVSLLADAIDFFG CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC DAANYGITLAVLSAGLVWRARAALLKGASMLLFGVVVMGRALWMVAQGGTPEALTMGTIG CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHH LLALLANGGVAAMLYAWRDGDANMRGVWLCTRNDAIGNIAVMLAALGVFGTGTAWPDLAV HHHHHHCCCCEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHH AAVMSGLAITSGWAVLRHALQELNIARSAARPS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SAHCCDHDQNAMNRALSPRYKKILWIALAINLVMFAVEVAAGLRSGSVSLLADAIDFFG CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC DAANYGITLAVLSAGLVWRARAALLKGASMLLFGVVVMGRALWMVAQGGTPEALTMGTIG CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHH LLALLANGGVAAMLYAWRDGDANMRGVWLCTRNDAIGNIAVMLAALGVFGTGTAWPDLAV HHHHHHCCCCEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHH AAVMSGLAITSGWAVLRHALQELNIARSAARPS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA