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The map label for this gene is ydcR [H]

Identifier: 91789297

GI number: 91789297

Start: 3643410

End: 3644855

Strand: Reverse

Name: ydcR [H]

Synonym: Bpro_3442

Alternate gene names: 91789297

Gene position: 3644855-3643410 (Counterclockwise)

Preceding gene: 91789298

Following gene: 91789294

Centisome position: 70.09

GC content: 66.8

Gene sequence:

>1446_bases
ATGAAGCGCTACGAACAACTGGTCGAACTGCTGGCAACCGACATCCGCAATGGCCGCCTCGCCCCGGGCACCCGCTTGCC
GTCGATTCGCACGCTGACCGCCCGGCACGGCCTCAGTGCTTCCACCGCCTTCAAGGCCTATTACCGGCTGGAGGAAAAAG
GCTTGGTGCGCGCCCGTCCACGCTCGGGCTATTACGTGACGGCCCTGGCCATGCAGCAGCTGGCCGCGCCCGCGCGGGGT
CGGGCCACCCGCCATGCCGGCAAGGCATCGGCCCGGGTCGCGCCCCGGCTGGACGTCAGCGAGCTGGTGTTTTCCGTGCT
GGGTGCGGCGCAGGACCCGGACATCGTGCCGCTGGGCTCGGCATTTGCCGCGTCCAGCCTCTTTCCGCTGCAGCGCCTGG
GCAAGTCGCTGGCCCGCACAGCGCGCCACATTCATGGTCAGGATGCGGTCGCCCACCTGCCGCAGGGCGACCCGGTGCTG
CGCGAGCAGATAGCGCTGCGCTACCTGGCGATGGGCATGCCGCAGGCCGCCGAGGAGGTGATCGTGACGAGCGGTGCGCT
GGAAGGGCTCAACCTCTGCCTCACCGCCGTGGCCCGGCCGGGCGATCTGGTGGCGATCGAGTCGCCGGGGTTTTATGCAG
GCCTGCAGGCGCTGGAGCGGCTCAGGATGAAGGCGCTGGAAATCCCGGTGCATCCGCAGGGCGGCCTGGATCTCGGCGCG
CTGGCCGAAGCGCTCAAGCGCCATCCGGTCAGGGCCTGCTGGTTCATGACGTCCTTCCAGAACCCGATGGGCGCCAGCCT
GTCCATGGAAAAAAAGCAGGCACTGGTCGCGCTGCTGGCCAGCCATGACGTTCCGCTGATTGAAGACGACGTGTATGGCG
AGCTTTACTTCAGCAACCGCTCCCCGTTGCCGGCCAAGGCCTTTGACCGCAAGGGACTGGTGATGCATTGCAGCTCCTTC
AGCAAAACGCTGGCGCCCGGTTACCGGGTAGGCTGGGTTTCGCCTGGGCGCTTTGGCCAGCAGGTGGAACGGCTCAAGCT
CATGACCACCCTGTCGGCCAGCCTGCCCGCGCAACTGGCCATTGCCGACTACCTGCAGCATGGCGGTTACGACAAGCATT
TGCGCCGCTTGCGCCATGCCATGGAGTCGCAACTGTCCAGCCTGCTGGCCGCCGTGGCGCGCCACTTTCCCGAGGGGGTG
CGTGTGTCGCGACCGGCAGGAGGTTATTTTGTGTGGGTGGAATTTGCCGAAGGCTTTGACGCGCTGGCCCTGCACGAGGC
AGCGCTGGCGCACGGCATCAGCGTGGCGCCCGGACCGATTTTTTCAGCGCGGCGTCAATTCCGGCACTGCCTGAGGTTGA
ACTATGGCCATCCGTGGGACGCGCGGTTTGAGGCGGCCATGCAGACGCTGGGACGCCTGATACGGCTGCAGGTGCCGTAT
GCGTGA

Upstream 100 bases:

>100_bases
CGAGGAGGCTGGTAACTCGTTGATTTCATTCATTTGAGATTACGTCTATTTGCGGTGACGCCCACCGATAGACGCTCAAC
GCCCACAAGGACAGGATTTG

Downstream 100 bases:

>100_bases
AGCGCCAGTCGGCCAAGCAGTGAGTTTTGCCGTGTGCGTTAAATTTGGCTGCCGCAAGGGGCTGGAGGCAGTCAAGGCCC
GAAACAGGAGCCAAACATGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MKRYEQLVELLATDIRNGRLAPGTRLPSIRTLTARHGLSASTAFKAYYRLEEKGLVRARPRSGYYVTALAMQQLAAPARG
RATRHAGKASARVAPRLDVSELVFSVLGAAQDPDIVPLGSAFAASSLFPLQRLGKSLARTARHIHGQDAVAHLPQGDPVL
REQIALRYLAMGMPQAAEEVIVTSGALEGLNLCLTAVARPGDLVAIESPGFYAGLQALERLRMKALEIPVHPQGGLDLGA
LAEALKRHPVRACWFMTSFQNPMGASLSMEKKQALVALLASHDVPLIEDDVYGELYFSNRSPLPAKAFDRKGLVMHCSSF
SKTLAPGYRVGWVSPGRFGQQVERLKLMTTLSASLPAQLAIADYLQHGGYDKHLRRLRHAMESQLSSLLAAVARHFPEGV
RVSRPAGGYFVWVEFAEGFDALALHEAALAHGISVAPGPIFSARRQFRHCLRLNYGHPWDARFEAAMQTLGRLIRLQVPY
A

Sequences:

>Translated_481_residues
MKRYEQLVELLATDIRNGRLAPGTRLPSIRTLTARHGLSASTAFKAYYRLEEKGLVRARPRSGYYVTALAMQQLAAPARG
RATRHAGKASARVAPRLDVSELVFSVLGAAQDPDIVPLGSAFAASSLFPLQRLGKSLARTARHIHGQDAVAHLPQGDPVL
REQIALRYLAMGMPQAAEEVIVTSGALEGLNLCLTAVARPGDLVAIESPGFYAGLQALERLRMKALEIPVHPQGGLDLGA
LAEALKRHPVRACWFMTSFQNPMGASLSMEKKQALVALLASHDVPLIEDDVYGELYFSNRSPLPAKAFDRKGLVMHCSSF
SKTLAPGYRVGWVSPGRFGQQVERLKLMTTLSASLPAQLAIADYLQHGGYDKHLRRLRHAMESQLSSLLAAVARHFPEGV
RVSRPAGGYFVWVEFAEGFDALALHEAALAHGISVAPGPIFSARRQFRHCLRLNYGHPWDARFEAAMQTLGRLIRLQVPY
A
>Mature_481_residues
MKRYEQLVELLATDIRNGRLAPGTRLPSIRTLTARHGLSASTAFKAYYRLEEKGLVRARPRSGYYVTALAMQQLAAPARG
RATRHAGKASARVAPRLDVSELVFSVLGAAQDPDIVPLGSAFAASSLFPLQRLGKSLARTARHIHGQDAVAHLPQGDPVL
REQIALRYLAMGMPQAAEEVIVTSGALEGLNLCLTAVARPGDLVAIESPGFYAGLQALERLRMKALEIPVHPQGGLDLGA
LAEALKRHPVRACWFMTSFQNPMGASLSMEKKQALVALLASHDVPLIEDDVYGELYFSNRSPLPAKAFDRKGLVMHCSSF
SKTLAPGYRVGWVSPGRFGQQVERLKLMTTLSASLPAQLAIADYLQHGGYDKHLRRLRHAMESQLSSLLAAVARHFPEGV
RVSRPAGGYFVWVEFAEGFDALALHEAALAHGISVAPGPIFSARRQFRHCLRLNYGHPWDARFEAAMQTLGRLIRLQVPY
A

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=324, Percent_Identity=27.1604938271605, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI33469970, Length=324, Percent_Identity=27.1604938271605, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI4507369, Length=176, Percent_Identity=29.5454545454545, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1787710, Length=475, Percent_Identity=45.8947368421053, Blast_Score=424, Evalue=1e-120,
Organism=Escherichia coli, GI1790797, Length=479, Percent_Identity=35.2818371607516, Blast_Score=297, Evalue=1e-81,
Organism=Escherichia coli, GI1786816, Length=237, Percent_Identity=29.957805907173, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17567663, Length=310, Percent_Identity=24.1935483870968, Blast_Score=76, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321000, Length=292, Percent_Identity=23.2876712328767, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322401, Length=266, Percent_Identity=26.6917293233083, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356535, Length=308, Percent_Identity=23.0519480519481, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI18859735, Length=186, Percent_Identity=26.8817204301075, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52554; Mature: 52554

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYEQLVELLATDIRNGRLAPGTRLPSIRTLTARHGLSASTAFKAYYRLEEKGLVRARP
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHCCCCHHHHHHHHHHHHHCCCEEECC
RSGYYVTALAMQQLAAPARGRATRHAGKASARVAPRLDVSELVFSVLGAAQDPDIVPLGS
CCCEEEHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCC
AFAASSLFPLQRLGKSLARTARHIHGQDAVAHLPQGDPVLREQIALRYLAMGMPQAAEEV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
IVTSGALEGLNLCLTAVARPGDLVAIESPGFYAGLQALERLRMKALEIPVHPQGGLDLGA
HHHCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LAEALKRHPVRACWFMTSFQNPMGASLSMEKKQALVALLASHDVPLIEDDVYGELYFSNR
HHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
SPLPAKAFDRKGLVMHCSSFSKTLAPGYRVGWVSPGRFGQQVERLKLMTTLSASLPAQLA
CCCCHHHHCCCCEEEEECHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHH
IADYLQHGGYDKHLRRLRHAMESQLSSLLAAVARHFPEGVRVSRPAGGYFVWVEFAEGFD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCC
ALALHEAALAHGISVAPGPIFSARRQFRHCLRLNYGHPWDARFEAAMQTLGRLIRLQVPY
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
A
C
>Mature Secondary Structure
MKRYEQLVELLATDIRNGRLAPGTRLPSIRTLTARHGLSASTAFKAYYRLEEKGLVRARP
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHCCCCHHHHHHHHHHHHHCCCEEECC
RSGYYVTALAMQQLAAPARGRATRHAGKASARVAPRLDVSELVFSVLGAAQDPDIVPLGS
CCCEEEHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCC
AFAASSLFPLQRLGKSLARTARHIHGQDAVAHLPQGDPVLREQIALRYLAMGMPQAAEEV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
IVTSGALEGLNLCLTAVARPGDLVAIESPGFYAGLQALERLRMKALEIPVHPQGGLDLGA
HHHCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LAEALKRHPVRACWFMTSFQNPMGASLSMEKKQALVALLASHDVPLIEDDVYGELYFSNR
HHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCC
SPLPAKAFDRKGLVMHCSSFSKTLAPGYRVGWVSPGRFGQQVERLKLMTTLSASLPAQLA
CCCCHHHHCCCCEEEEECHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHH
IADYLQHGGYDKHLRRLRHAMESQLSSLLAAVARHFPEGVRVSRPAGGYFVWVEFAEGFD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCC
ALALHEAALAHGISVAPGPIFSARRQFRHCLRLNYGHPWDARFEAAMQTLGRLIRLQVPY
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]