| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is livF [H]
Identifier: 91789174
GI number: 91789174
Start: 3513351
End: 3514064
Strand: Reverse
Name: livF [H]
Synonym: Bpro_3318
Alternate gene names: 91789174
Gene position: 3514064-3513351 (Counterclockwise)
Preceding gene: 91789175
Following gene: 91789168
Centisome position: 67.57
GC content: 56.16
Gene sequence:
>714_bases ATGCGATTGCTGGAAGTCAAAGGGTTAAGCGTTTCCATCTTCGGAAACAGCGTGCTGCGGGGCATCTCCGGGGCGGTGAA CGCCGGTGAACTGGTGTGCCTTGTGGGACGCAACGGAGCGGGAAAAACGACGACGATGCGCTCGATCATGGGTTACCAGG CGATTCATGGCGGCGACGTTCTCTGGAAGGACAAATCCATCAAGGGACTGGATACCCACCGGATTGCAGCACTTGGTGTG GGCTACACCCCCGAGGGCAGCGATGTTTTTGGGGAGCTGTCGGTAGAGGACAACATTGCGCTACCGACCTGGACGCGTCG AACCGACACCTCGGAACAGGAGCGGATCCGGAAGGCTTATGAAGTCTTCCCCAAGCTGCTTCAGTATCTTCACCGAGGCG GACACCAGCTTTCAGGAGGAGAACGAAAGATGGTGTCCATCGCTCGCGCTCTGGCACTGGACCCGGAAATGCTGCTGCTG GATGAGGCATTCGAAGGCCTCTCGCCAGCCATTATTCCGGTCATCAGTGAGGGCCTGCAAAAAATCGTTGCACAGGGGCG CGGTGTACTGCTGGCCGAGTCAAATTTTTACCACCTTCCTTCGTTTGCGCAAAAAATCTATGTCATTGAGCGGGGCGAAA TCATCTTCGAAGGCACACTGCAGCAGGTTCAGCGTGATGCTGCGGTGATGAAGGTTATCAAAGGCGTGGAATGA
Upstream 100 bases:
>100_bases TGGCGATGATGGCGGGCAGAAAGATTGCGGATCTGCCCACCGGGGAGTTTCTTCGTAATGAGGAAGTGCTGGGGATTGTC GTGGGCAAGGGAGTGCACTG
Downstream 100 bases:
>100_bases GTTGCGGCTGTTGCAGCACTGCAGTGGTGTCCAGCTGGTTGCCAACCAGGCCAACCAGGTCAGCTACGCCAGGCGCCACA GCAGACATCTTCTGATGGAG
Product: ABC transporter-like protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MRLLEVKGLSVSIFGNSVLRGISGAVNAGELVCLVGRNGAGKTTTMRSIMGYQAIHGGDVLWKDKSIKGLDTHRIAALGV GYTPEGSDVFGELSVEDNIALPTWTRRTDTSEQERIRKAYEVFPKLLQYLHRGGHQLSGGERKMVSIARALALDPEMLLL DEAFEGLSPAIIPVISEGLQKIVAQGRGVLLAESNFYHLPSFAQKIYVIERGEIIFEGTLQQVQRDAAVMKVIKGVE
Sequences:
>Translated_237_residues MRLLEVKGLSVSIFGNSVLRGISGAVNAGELVCLVGRNGAGKTTTMRSIMGYQAIHGGDVLWKDKSIKGLDTHRIAALGV GYTPEGSDVFGELSVEDNIALPTWTRRTDTSEQERIRKAYEVFPKLLQYLHRGGHQLSGGERKMVSIARALALDPEMLLL DEAFEGLSPAIIPVISEGLQKIVAQGRGVLLAESNFYHLPSFAQKIYVIERGEIIFEGTLQQVQRDAAVMKVIKGVE >Mature_237_residues MRLLEVKGLSVSIFGNSVLRGISGAVNAGELVCLVGRNGAGKTTTMRSIMGYQAIHGGDVLWKDKSIKGLDTHRIAALGV GYTPEGSDVFGELSVEDNIALPTWTRRTDTSEQERIRKAYEVFPKLLQYLHRGGHQLSGGERKMVSIARALALDPEMLLL DEAFEGLSPAIIPVISEGLQKIVAQGRGVLLAESNFYHLPSFAQKIYVIERGEIIFEGTLQQVQRDAAVMKVIKGVE
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961252, Length=215, Percent_Identity=30.6976744186047, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4505771, Length=214, Percent_Identity=29.9065420560748, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI42741659, Length=215, Percent_Identity=31.6279069767442, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI47078218, Length=199, Percent_Identity=25.1256281407035, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI45446740, Length=199, Percent_Identity=25.1256281407035, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI9961250, Length=219, Percent_Identity=28.7671232876712, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=183, Percent_Identity=28.4153005464481, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI9955968, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9955966, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI45243524, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI148612844, Length=216, Percent_Identity=28.2407407407407, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI150417984, Length=199, Percent_Identity=24.6231155778894, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082268, Length=201, Percent_Identity=36.81592039801, Blast_Score=131, Evalue=3e-32, Organism=Escherichia coli, GI1789593, Length=237, Percent_Identity=35.0210970464135, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1789864, Length=255, Percent_Identity=27.4509803921569, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789672, Length=203, Percent_Identity=26.6009852216749, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787112, Length=209, Percent_Identity=33.9712918660287, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787792, Length=227, Percent_Identity=28.6343612334802, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1788761, Length=239, Percent_Identity=28.0334728033473, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=28.6324786324786, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=26.457399103139, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787370, Length=168, Percent_Identity=30.3571428571429, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1788450, Length=216, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI87081791, Length=169, Percent_Identity=28.4023668639053, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789032, Length=250, Percent_Identity=26.8, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789891, Length=207, Percent_Identity=26.5700483091787, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1790467, Length=200, Percent_Identity=29.5, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786563, Length=168, Percent_Identity=32.7380952380952, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1790190, Length=236, Percent_Identity=24.5762711864407, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1788897, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787712, Length=149, Percent_Identity=33.5570469798658, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786398, Length=218, Percent_Identity=27.9816513761468, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87081834, Length=151, Percent_Identity=30.4635761589404, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI48995001, Length=196, Percent_Identity=29.0816326530612, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87082267, Length=167, Percent_Identity=26.9461077844311, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790544, Length=238, Percent_Identity=22.6890756302521, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787143, Length=230, Percent_Identity=27.8260869565217, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI48994943, Length=243, Percent_Identity=23.8683127572016, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786654, Length=220, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI145693107, Length=149, Percent_Identity=30.2013422818792, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI87081782, Length=227, Percent_Identity=24.2290748898678, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787972, Length=236, Percent_Identity=25, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1788210, Length=239, Percent_Identity=25.5230125523013, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787500, Length=215, Percent_Identity=24.6511627906977, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1787758, Length=213, Percent_Identity=28.169014084507, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1788506, Length=223, Percent_Identity=25.5605381165919, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI87081709, Length=230, Percent_Identity=24.3478260869565, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=23.7442922374429, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1789873, Length=206, Percent_Identity=26.2135922330097, Blast_Score=60, Evalue=9e-11, Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=25.1046025104602, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI212646699, Length=222, Percent_Identity=32.8828828828829, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193211015, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193211017, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71996809, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17558664, Length=211, Percent_Identity=28.9099526066351, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71984940, Length=207, Percent_Identity=29.951690821256, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115533608, Length=199, Percent_Identity=26.6331658291457, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193209708, Length=228, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI25146777, Length=207, Percent_Identity=29.951690821256, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17565586, Length=217, Percent_Identity=25.3456221198157, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17541710, Length=216, Percent_Identity=26.8518518518519, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI115533592, Length=219, Percent_Identity=27.8538812785388, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17569143, Length=214, Percent_Identity=31.3084112149533, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567265, Length=212, Percent_Identity=27.8301886792453, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17569145, Length=220, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567269, Length=214, Percent_Identity=27.1028037383178, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=180, Percent_Identity=29.4444444444444, Blast_Score=76, Evalue=4e-15, Organism=Drosophila melanogaster, GI85726357, Length=217, Percent_Identity=29.9539170506912, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24659289, Length=213, Percent_Identity=29.5774647887324, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24650855, Length=209, Percent_Identity=28.2296650717703, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24650853, Length=209, Percent_Identity=28.2296650717703, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281362751, Length=210, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI85724864, Length=219, Percent_Identity=23.7442922374429, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24580555, Length=219, Percent_Identity=23.7442922374429, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI85816269, Length=219, Percent_Identity=23.7442922374429, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24580553, Length=219, Percent_Identity=23.7442922374429, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24662800, Length=217, Percent_Identity=27.1889400921659, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI85725262, Length=204, Percent_Identity=25.9803921568627, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582014, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24582012, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24643674, Length=216, Percent_Identity=28.2407407407407, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25847; Mature: 25847
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLEVKGLSVSIFGNSVLRGISGAVNAGELVCLVGRNGAGKTTTMRSIMGYQAIHGGDV CEEEEECCCEEEECCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCE LWKDKSIKGLDTHRIAALGVGYTPEGSDVFGELSVEDNIALPTWTRRTDTSEQERIRKAY EEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH EVFPKLLQYLHRGGHQLSGGERKMVSIARALALDPEMLLLDEAFEGLSPAIIPVISEGLQ HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH KIVAQGRGVLLAESNFYHLPSFAQKIYVIERGEIIFEGTLQQVQRDAAVMKVIKGVE HHHHCCCCEEEECCCCEECCHHHHEEEEEECCCEEEHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRLLEVKGLSVSIFGNSVLRGISGAVNAGELVCLVGRNGAGKTTTMRSIMGYQAIHGGDV CEEEEECCCEEEECCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCE LWKDKSIKGLDTHRIAALGVGYTPEGSDVFGELSVEDNIALPTWTRRTDTSEQERIRKAY EEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH EVFPKLLQYLHRGGHQLSGGERKMVSIARALALDPEMLLLDEAFEGLSPAIIPVISEGLQ HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH KIVAQGRGVLLAESNFYHLPSFAQKIYVIERGEIIFEGTLQQVQRDAAVMKVIKGVE HHHHCCCCEEEECCCCEECCHHHHEEEEEECCCEEEHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]