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The map label for this gene is ydhC [H]

Identifier: 91789079

GI number: 91789079

Start: 3407453

End: 3408226

Strand: Direct

Name: ydhC [H]

Synonym: Bpro_3219

Alternate gene names: 91789079

Gene position: 3407453-3408226 (Clockwise)

Preceding gene: 91789074

Following gene: 91789080

Centisome position: 65.52

GC content: 65.76

Gene sequence:

>774_bases
ATGAGCACCTCACCCGCCCTCTCTTCCTTCTCTCCCTTCTCTCCCCTGTCCCCTCTGCAAATGCTGCAGGCCAATACCCT
GCCCTCACTGGTGCAGGCCGAGATCGAGCAAATGATCCTGCGCAGCGAGCTGCCCGGAGGCGCGCGAATCAATGAAAGCG
ACCTCGCCGCCCGCTTCGGCACCAGCCGCGGCCCGGTGCGCGAGGCACTGCGCGCGCTGGAAGAATGCGGCCTGGTGCGC
TCGGAAAAAAACCGCGGGGTCTTCGTGCGCGAAATAACGCTGGCCGAAGCCGACGAGATCTACGACCTGCGCGAGGTGCT
GGACGACATGATCGGACGCCGCCTCGCCGTGCAGATCACGGCGCAGCAGCTGAAGGTGCTGAAGAACCTTCTCGCCGAGA
TGGACGACGCCATGAGCCGCCAGGACATCAAGCGCTACCACGCGCTCAACCTCGAGTTTCACGATGCGCTGGTTGGTTTT
GCCGGCAACTCCCGGCTGAGCGACACCTACCGGCGCCTGACCAAGGAGCTGCTGCTGTTCCGCCTGCGCGGCCTGCAGGA
CGGGGGCGGCTTTGCGGTCTCCAACGCCGAGCACAAGGCCGCCGTGCTGGCCATCGCATCACGCGACCCTGAGCGCGCCG
GCCGGACGCTGCGCGCCCATGCGGCCGACAGCCGGGCCCGCATGCACAAGGCTTTTGGCAGAGGCGCCAGTGAGCCAGTC
TCTCCCGCAATTTCCCTGAAAAAACCACGGCCCATCATGGCCATCAACCCCTGA

Upstream 100 bases:

>100_bases
GCGAATAGTAAATTGCAGATCGTAATATGTCAATTGTTGACAATCTTCAATTTGCAGGATTTAATCACCGCATCGGCACG
AAAAGAAACCGGACTCCTTC

Downstream 100 bases:

>100_bases
GGACATCATGAACAAAGACATTACCGTGAACGACAGGCGCTACCAATGGATGGACCACCCGGTGGTGGTGGTCTGCGTGG
ACGGCTGCCAGTACGAATAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSTSPALSSFSPFSPLSPLQMLQANTLPSLVQAEIEQMILRSELPGGARINESDLAARFGTSRGPVREALRALEECGLVR
SEKNRGVFVREITLAEADEIYDLREVLDDMIGRRLAVQITAQQLKVLKNLLAEMDDAMSRQDIKRYHALNLEFHDALVGF
AGNSRLSDTYRRLTKELLLFRLRGLQDGGGFAVSNAEHKAAVLAIASRDPERAGRTLRAHAADSRARMHKAFGRGASEPV
SPAISLKKPRPIMAINP

Sequences:

>Translated_257_residues
MSTSPALSSFSPFSPLSPLQMLQANTLPSLVQAEIEQMILRSELPGGARINESDLAARFGTSRGPVREALRALEECGLVR
SEKNRGVFVREITLAEADEIYDLREVLDDMIGRRLAVQITAQQLKVLKNLLAEMDDAMSRQDIKRYHALNLEFHDALVGF
AGNSRLSDTYRRLTKELLLFRLRGLQDGGGFAVSNAEHKAAVLAIASRDPERAGRTLRAHAADSRARMHKAFGRGASEPV
SPAISLKKPRPIMAINP
>Mature_256_residues
STSPALSSFSPFSPLSPLQMLQANTLPSLVQAEIEQMILRSELPGGARINESDLAARFGTSRGPVREALRALEECGLVRS
EKNRGVFVREITLAEADEIYDLREVLDDMIGRRLAVQITAQQLKVLKNLLAEMDDAMSRQDIKRYHALNLEFHDALVGFA
GNSRLSDTYRRLTKELLLFRLRGLQDGGGFAVSNAEHKAAVLAIASRDPERAGRTLRAHAADSRARMHKAFGRGASEPVS
PAISLKKPRPIMAINP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=135, Percent_Identity=29.6296296296296, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28297; Mature: 28166

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSPALSSFSPFSPLSPLQMLQANTLPSLVQAEIEQMILRSELPGGARINESDLAARFG
CCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
TSRGPVREALRALEECGLVRSEKNRGVFVREITLAEADEIYDLREVLDDMIGRRLAVQIT
CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCHHEEHHH
AQQLKVLKNLLAEMDDAMSRQDIKRYHALNLEFHDALVGFAGNSRLSDTYRRLTKELLLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
RLRGLQDGGGFAVSNAEHKAAVLAIASRDPERAGRTLRAHAADSRARMHKAFGRGASEPV
HHHCCCCCCCEEECCCCCCEEEEEEECCCHHHHCCEEHHHHHHHHHHHHHHHCCCCCCCC
SPAISLKKPRPIMAINP
CCCCCCCCCCCCEEECC
>Mature Secondary Structure 
STSPALSSFSPFSPLSPLQMLQANTLPSLVQAEIEQMILRSELPGGARINESDLAARFG
CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
TSRGPVREALRALEECGLVRSEKNRGVFVREITLAEADEIYDLREVLDDMIGRRLAVQIT
CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCHHEEHHH
AQQLKVLKNLLAEMDDAMSRQDIKRYHALNLEFHDALVGFAGNSRLSDTYRRLTKELLLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
RLRGLQDGGGFAVSNAEHKAAVLAIASRDPERAGRTLRAHAADSRARMHKAFGRGASEPV
HHHCCCCCCCEEECCCCCCEEEEEEECCCHHHHCCEEHHHHHHHHHHHHHHHCCCCCCCC
SPAISLKKPRPIMAINP
CCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]