| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789020
Identifier: 91789020
GI number: 91789020
Start: 3341773
End: 3344478
Strand: Direct
Name: 91789020
Synonym: Bpro_3160
Alternate gene names: NA
Gene position: 3341773-3344478 (Clockwise)
Preceding gene: 91789019
Following gene: 91789021
Centisome position: 64.26
GC content: 67.0
Gene sequence:
>2706_bases GTGTCGCGCGGTCCGGCCATTCCAGAGCCAGCCGTTCCCGGTGTCACGCAGTTACAACTTGCCGGGGCGTCCCAGGGCCG CGGTGCAGCAGCAGTAGCGGCGCAGGCCAGCCAGGGGGCGGCCAGGCCGGCTCCGGAAGACAGGCCGTTGTCAGCCGACT GGACCGCTTTCTTTGATTTCCTCAGGACGGACGGTTTTTACGACCTGAACCACCGCACCGCCAACCTGCGGCGCCAGATC CGCGACAACGGCGTGACCTACAACGTTTACGCCGATGCCAACGGGCCGCAGCGGCCCTGGTCGCTCGACCTCTTCCCGAT GATGGTCTCGGCTGCGGACTGGGCCGTGATTGAAGCCGGCATCCAGCAACGCGCCCGATTGCTGGACCGCATCATGGCCG ACATCTACGGCCCGCAGGAACTGCTTTCAAAGGGCTTGCTGCCCAGCGCGCTGGTGCACGGCAACCCCGGCTACCTGCGC GGCATGCAGGGCGTCAAGCCCGCTGGTGGTACCCACCTGCACATCGCGGCCTTCGACATCGGCCACGGCCCGGATGGGCG TTGGTCGGTGGTGTCCCAACGCACGCAGGCGCCCTCGGGCCTGGGCTACCTACTGGAAAACCGGCTGACCATCTCCCTGC TGTTTCCGGAAGCCTTTCGGGAGATGAAGGTGCAGCGGCTGGCCGCCTCGTACAAGGCCCTGGTGGACGGGCTCAAGGCG ATGAGCCCCGCCAATGAGGGCAACGAGGAAAGCCGGGTGGTTCTGCTGACGCCGGGCCCCTACAACGAAACCTATTTCGA GCACGCCTACCTGGCCCGCTTTCTGGGGCTGACGCTGGTCGAGGGCAACGACCTGCTGGTACGCGACGACAAGCTGTACC TCAAAACCCTGCGCGGCCTGGAGCCTGTGCATGGCCTGCTCAAGCGGCTCGACGATGAATTCCTGGACCCGCTGGAGTTG CGTTCCGACTCCACCCTGGGCGTGCCCGGCCTGCTGCAGGTCATTCGTGCGGGCAATGTGCTGGTGGTCAACACCCCGGG CTCGGCCTTTCTGGAGTCCAGCGCCCTGCTCGGATTCCTGCCGGCGCTCTCGCAGCACCTGCTCGGTGAAACACTGGCCC TGCCTTCGCTGGCCACCTGGTGGTGTGGCGAGCAGGCCGTCATGCAGGACGTGCTGAGCCAGCTCAAGGACTGCGTGATC AAGCCCACCCATGCCGGCTCGGGTATGGCCTCCGTCATCGGGCACACCCTGTCCCGCCGCGAACTCGACGAATGGGCCGG CCGCATTGTCCGGCGCGGCGAGGATTACACCGTGCAGTCCTACCTGCCGCTGTCGCAGACACCCACCTGGCAGGGTGAAA GAATGGCCCCGCGTTCGACCATGCTCCGTGTCTTTGCGGTCGCCGACGGCGCGGGTTCCTGGCAGGTGCTGCCCGGCGGC CTGGCACGGCTCGCCGGCAAAAACGAAAACATGGCCTCCATGCAGCACGGCGGCAGCAGTGCCGACGTCTGGGTGCTCGG CAAGCCCTCGGGTACAAGCTCAACCCAAGCCACCCCGGCCGACACCGCAGCGGTGCACCGCTCCGAGCACCCCGCCCCGG CTTGGGCCACGGTACCCTTGCGCCACCGCCCACCCGTGACCAGCCGGGCGGCCGAAAACCTGTTCTGGCTGGGCCGCTAC ACCGAGCGCGCCGAGAACTCCACACGGCTGGCCCAGTTAACGCTGCAGTGCCTGGGCGGCGAAGACCAGACTTCGCAACC ACTGCTGGACTGGCTGACCCGCATGGCCGTGAGCAATGCCCTGGTGCTCGACACCGTGCCACCGGCGACGCAAGCCCGGC GCGTCTTTGAACGCGCCCTGATCGCCAGCCTGGCCGACACCGAGCAGGCCGCCAGCGTGGGCTACAACCTGCGAGCCCTC AAGAGTGCTGCCTCGGCCGTGCGCGAGCGCCTGTCGCAGGAACAGTGGCACGTGATCGTGCGCACGGAGGCCGACTTCTT TCATCATTGCAAGGCATTCAGCGGCGCCGGTTCACAGAGCCAGCAGCAAGGCCATTTGAATGGGGTCCATCACGCGTCGG AATATTCCTCGGTCGAGGCGCTCAGGGCCCTTGAATCCCTCAGCGGCTTCCTGGCCGCCATGACGGGCGCGCAGACCGAC CGCATGACGCGCGACGACGGCTGGCGGCTGCTGAGCATAGGCAGGATGCTCGAGCGGCTCTATACGCTGGCCGCCGCGCT GGTGCATGGCTTTGAAACCGGGTCCGTCTTCGAGGAGGGTGGCTTTGGCGCCATCGTGTCCCTGTTTGACAGCACCATCA GCTTTCATGCGCAGTATCAGCAGCGACGCGACATTCCCGCCCTGCTCGACCTGCTGGTGCTGGACCTCGACAACCCGCGC TCGCTGGGCTGGGTGGTGCAGGCCCTGCGCGGGCGCCTGGCCAAACTGGCCAGCAGCACGCCGGTCGAGTTACCCGACCT CGCCGAGGATTTGCCCGAACCGGGCAACTGGGTGCTCGCCGACCTGTGCGGCAACGTTGAGGGGGCCGAGGGCGCAACCA CTGAAGCCTGCGGCGATGCCCCTGCGTGGGCGCCGCTCATCGGACTGCTGGAGCAGTGCTGCACCGAAGCGCTGGAACTC TCGGATACCATCAGCCGGCGTTATTTCAGCCACGCCGCATCGGGCAGCCAAAGCCTGGGCGCATAG
Upstream 100 bases:
>100_bases GTCACTTTTTGCCGCCCAGGCGCTGGACGAGCCGTGCACGCTGGCTTCTGCGCTGGCGCCCGCGGCTGCGCCCGGGCATT TTGACGAGTTACGCGGTGGC
Downstream 100 bases:
>100_bases GCCGCCCCCCCTTTCCCCCTTTCTCTCCTTTCCTTTCCGTTCCAACAAACCCCGATCCCGTGCTGCTCCACGTCGTCCAC GAAACCAGCTACCGCTATAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 901; Mature: 900
Protein sequence:
>901_residues MSRGPAIPEPAVPGVTQLQLAGASQGRGAAAVAAQASQGAARPAPEDRPLSADWTAFFDFLRTDGFYDLNHRTANLRRQI RDNGVTYNVYADANGPQRPWSLDLFPMMVSAADWAVIEAGIQQRARLLDRIMADIYGPQELLSKGLLPSALVHGNPGYLR GMQGVKPAGGTHLHIAAFDIGHGPDGRWSVVSQRTQAPSGLGYLLENRLTISLLFPEAFREMKVQRLAASYKALVDGLKA MSPANEGNEESRVVLLTPGPYNETYFEHAYLARFLGLTLVEGNDLLVRDDKLYLKTLRGLEPVHGLLKRLDDEFLDPLEL RSDSTLGVPGLLQVIRAGNVLVVNTPGSAFLESSALLGFLPALSQHLLGETLALPSLATWWCGEQAVMQDVLSQLKDCVI KPTHAGSGMASVIGHTLSRRELDEWAGRIVRRGEDYTVQSYLPLSQTPTWQGERMAPRSTMLRVFAVADGAGSWQVLPGG LARLAGKNENMASMQHGGSSADVWVLGKPSGTSSTQATPADTAAVHRSEHPAPAWATVPLRHRPPVTSRAAENLFWLGRY TERAENSTRLAQLTLQCLGGEDQTSQPLLDWLTRMAVSNALVLDTVPPATQARRVFERALIASLADTEQAASVGYNLRAL KSAASAVRERLSQEQWHVIVRTEADFFHHCKAFSGAGSQSQQQGHLNGVHHASEYSSVEALRALESLSGFLAAMTGAQTD RMTRDDGWRLLSIGRMLERLYTLAAALVHGFETGSVFEEGGFGAIVSLFDSTISFHAQYQQRRDIPALLDLLVLDLDNPR SLGWVVQALRGRLAKLASSTPVELPDLAEDLPEPGNWVLADLCGNVEGAEGATTEACGDAPAWAPLIGLLEQCCTEALEL SDTISRRYFSHAASGSQSLGA
Sequences:
>Translated_901_residues MSRGPAIPEPAVPGVTQLQLAGASQGRGAAAVAAQASQGAARPAPEDRPLSADWTAFFDFLRTDGFYDLNHRTANLRRQI RDNGVTYNVYADANGPQRPWSLDLFPMMVSAADWAVIEAGIQQRARLLDRIMADIYGPQELLSKGLLPSALVHGNPGYLR GMQGVKPAGGTHLHIAAFDIGHGPDGRWSVVSQRTQAPSGLGYLLENRLTISLLFPEAFREMKVQRLAASYKALVDGLKA MSPANEGNEESRVVLLTPGPYNETYFEHAYLARFLGLTLVEGNDLLVRDDKLYLKTLRGLEPVHGLLKRLDDEFLDPLEL RSDSTLGVPGLLQVIRAGNVLVVNTPGSAFLESSALLGFLPALSQHLLGETLALPSLATWWCGEQAVMQDVLSQLKDCVI KPTHAGSGMASVIGHTLSRRELDEWAGRIVRRGEDYTVQSYLPLSQTPTWQGERMAPRSTMLRVFAVADGAGSWQVLPGG LARLAGKNENMASMQHGGSSADVWVLGKPSGTSSTQATPADTAAVHRSEHPAPAWATVPLRHRPPVTSRAAENLFWLGRY TERAENSTRLAQLTLQCLGGEDQTSQPLLDWLTRMAVSNALVLDTVPPATQARRVFERALIASLADTEQAASVGYNLRAL KSAASAVRERLSQEQWHVIVRTEADFFHHCKAFSGAGSQSQQQGHLNGVHHASEYSSVEALRALESLSGFLAAMTGAQTD RMTRDDGWRLLSIGRMLERLYTLAAALVHGFETGSVFEEGGFGAIVSLFDSTISFHAQYQQRRDIPALLDLLVLDLDNPR SLGWVVQALRGRLAKLASSTPVELPDLAEDLPEPGNWVLADLCGNVEGAEGATTEACGDAPAWAPLIGLLEQCCTEALEL SDTISRRYFSHAASGSQSLGA >Mature_900_residues SRGPAIPEPAVPGVTQLQLAGASQGRGAAAVAAQASQGAARPAPEDRPLSADWTAFFDFLRTDGFYDLNHRTANLRRQIR DNGVTYNVYADANGPQRPWSLDLFPMMVSAADWAVIEAGIQQRARLLDRIMADIYGPQELLSKGLLPSALVHGNPGYLRG MQGVKPAGGTHLHIAAFDIGHGPDGRWSVVSQRTQAPSGLGYLLENRLTISLLFPEAFREMKVQRLAASYKALVDGLKAM SPANEGNEESRVVLLTPGPYNETYFEHAYLARFLGLTLVEGNDLLVRDDKLYLKTLRGLEPVHGLLKRLDDEFLDPLELR SDSTLGVPGLLQVIRAGNVLVVNTPGSAFLESSALLGFLPALSQHLLGETLALPSLATWWCGEQAVMQDVLSQLKDCVIK PTHAGSGMASVIGHTLSRRELDEWAGRIVRRGEDYTVQSYLPLSQTPTWQGERMAPRSTMLRVFAVADGAGSWQVLPGGL ARLAGKNENMASMQHGGSSADVWVLGKPSGTSSTQATPADTAAVHRSEHPAPAWATVPLRHRPPVTSRAAENLFWLGRYT ERAENSTRLAQLTLQCLGGEDQTSQPLLDWLTRMAVSNALVLDTVPPATQARRVFERALIASLADTEQAASVGYNLRALK SAASAVRERLSQEQWHVIVRTEADFFHHCKAFSGAGSQSQQQGHLNGVHHASEYSSVEALRALESLSGFLAAMTGAQTDR MTRDDGWRLLSIGRMLERLYTLAAALVHGFETGSVFEEGGFGAIVSLFDSTISFHAQYQQRRDIPALLDLLVLDLDNPRS LGWVVQALRGRLAKLASSTPVELPDLAEDLPEPGNWVLADLCGNVEGAEGATTEACGDAPAWAPLIGLLEQCCTEALELS DTISRRYFSHAASGSQSLGA
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007296 - InterPro: IPR007297 - InterPro: IPR007302 [H]
Pfam domain/function: PF04168 DUF403; PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 97463; Mature: 97332
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGPAIPEPAVPGVTQLQLAGASQGRGAAAVAAQASQGAARPAPEDRPLSADWTAFFDF CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH LRTDGFYDLNHRTANLRRQIRDNGVTYNVYADANGPQRPWSLDLFPMMVSAADWAVIEAG HHCCCEEECCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH IQQRARLLDRIMADIYGPQELLSKGLLPSALVHGNPGYLRGMQGVKPAGGTHLHIAAFDI HHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHCCCCHHHCCCCCCCCCCCCEEEEEEEEC GHGPDGRWSVVSQRTQAPSGLGYLLENRLTISLLFPEAFREMKVQRLAASYKALVDGLKA CCCCCCCCHHHHHHHCCCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH MSPANEGNEESRVVLLTPGPYNETYFEHAYLARFLGLTLVEGNDLLVRDDKLYLKTLRGL CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECCCEEEEECCHHHHHHHHCC EPVHGLLKRLDDEFLDPLELRSDSTLGVPGLLQVIRAGNVLVVNTPGSAFLESSALLGFL CHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH PALSQHLLGETLALPSLATWWCGEQAVMQDVLSQLKDCVIKPTHAGSGMASVIGHTLSRR HHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH ELDEWAGRIVRRGEDYTVQSYLPLSQTPTWQGERMAPRSTMLRVFAVADGAGSWQVLPGG HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHEEEEEEECCCCCCEECCCH LARLAGKNENMASMQHGGSSADVWVLGKPSGTSSTQATPADTAAVHRSEHPAPAWATVPL HHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCEEECCC RHRPPVTSRAAENLFWLGRYTERAENSTRLAQLTLQCLGGEDQTSQPLLDWLTRMAVSNA CCCCCCHHHHHHCEEEHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC LVLDTVPPATQARRVFERALIASLADTEQAASVGYNLRALKSAASAVRERLSQEQWHVIV EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE RTEADFFHHCKAFSGAGSQSQQQGHLNGVHHASEYSSVEALRALESLSGFLAAMTGAQTD EECHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RMTRDDGWRLLSIGRMLERLYTLAAALVHGFETGSVFEEGGFGAIVSLFDSTISFHAQYQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH QRRDIPALLDLLVLDLDNPRSLGWVVQALRGRLAKLASSTPVELPDLAEDLPEPGNWVLA HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEE DLCGNVEGAEGATTEACGDAPAWAPLIGLLEQCCTEALELSDTISRRYFSHAASGSQSLG EHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC A C >Mature Secondary Structure SRGPAIPEPAVPGVTQLQLAGASQGRGAAAVAAQASQGAARPAPEDRPLSADWTAFFDF CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH LRTDGFYDLNHRTANLRRQIRDNGVTYNVYADANGPQRPWSLDLFPMMVSAADWAVIEAG HHCCCEEECCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH IQQRARLLDRIMADIYGPQELLSKGLLPSALVHGNPGYLRGMQGVKPAGGTHLHIAAFDI HHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHCCCCHHHCCCCCCCCCCCCEEEEEEEEC GHGPDGRWSVVSQRTQAPSGLGYLLENRLTISLLFPEAFREMKVQRLAASYKALVDGLKA CCCCCCCCHHHHHHHCCCCCHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH MSPANEGNEESRVVLLTPGPYNETYFEHAYLARFLGLTLVEGNDLLVRDDKLYLKTLRGL CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECCCEEEEECCHHHHHHHHCC EPVHGLLKRLDDEFLDPLELRSDSTLGVPGLLQVIRAGNVLVVNTPGSAFLESSALLGFL CHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH PALSQHLLGETLALPSLATWWCGEQAVMQDVLSQLKDCVIKPTHAGSGMASVIGHTLSRR HHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH ELDEWAGRIVRRGEDYTVQSYLPLSQTPTWQGERMAPRSTMLRVFAVADGAGSWQVLPGG HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHEEEEEEECCCCCCEECCCH LARLAGKNENMASMQHGGSSADVWVLGKPSGTSSTQATPADTAAVHRSEHPAPAWATVPL HHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCEEECCC RHRPPVTSRAAENLFWLGRYTERAENSTRLAQLTLQCLGGEDQTSQPLLDWLTRMAVSNA CCCCCCHHHHHHCEEEHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC LVLDTVPPATQARRVFERALIASLADTEQAASVGYNLRALKSAASAVRERLSQEQWHVIV EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE RTEADFFHHCKAFSGAGSQSQQQGHLNGVHHASEYSSVEALRALESLSGFLAAMTGAQTD EECHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RMTRDDGWRLLSIGRMLERLYTLAAALVHGFETGSVFEEGGFGAIVSLFDSTISFHAQYQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH QRRDIPALLDLLVLDLDNPRSLGWVVQALRGRLAKLASSTPVELPDLAEDLPEPGNWVLA HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEE DLCGNVEGAEGATTEACGDAPAWAPLIGLLEQCCTEALELSDTISRRYFSHAASGSQSLG EHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]