| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yebA [H]
Identifier: 91789008
GI number: 91789008
Start: 3324386
End: 3326416
Strand: Direct
Name: yebA [H]
Synonym: Bpro_3148
Alternate gene names: 91789008
Gene position: 3324386-3326416 (Clockwise)
Preceding gene: 91789007
Following gene: 91789009
Centisome position: 63.93
GC content: 66.91
Gene sequence:
>2031_bases ATGCTGACCCGCCTCACCACCCTCCCCCGCGAAGCCCGCGACACGCTGTTCCTGCTGCTGGTCATCGCGTGGGTGCTGCT GCCGCAGGTGGGCAACCTGCCCTTGTGGTGCAGCGCACTGGCCGGCGCTGTGCTGGTCTGGCGCGGCTGGCTGACGCTGC AGTCCCGGCCGCTGCCGGGCAAATGGTGGCTGGTCGGCCTGCTGGCCCTGACCATTGCCGCCACGCTGATGACCCACCGT ACCCTGCTGGGACGCGACGCCGGCGTCACCCTGCTGGTCGTGTTGCTGACGCTGAAAACCCTGGAATTGCGCGCCCGGCG CGATGCGTTTGTGGTGTTCTTCCTCGGTTTCTTCTGCATGCTGAGCAACTTTTTTTATTCGCAATCACTGCTCACCGCAG CCAGCATGTTGCTGGGATTGCTGGGGCTGCTGACCGTGCTCGTCAATGCCCACATGCCGGTCGGCAAACCGCCGCTGGCG CTGGCCGCGCGGACCGCCGGCGGGATGGTCCTGCTCGGCGCCCCTATCATGGTGGTGCTGTTCCTGCTGTTCCCGCGGCT GGCGCCGCTCTGGGGCGTTCCCAGCGATGCCATGACCGGCCGCAGCGGCCTGAGTGCGAGCATGCAGGTGGGCAACATCG CCACCCTGGCGCTGGACGACAGCGTGGCCATGCGCATCCGGTTTGAAGGCCGCCCGCCACCCCAGCAGGATTTGTATTTT CGCGGCCCCGTGATGTCCAGCTTTGATGGCCGGGAGTGGCGACCGCCGCTGTTCAACTTCTCCCCGCGTGGCGGCCAGGG CGGGGTGGGCAGCAATCTGTCCGTGGCGGGCGCTCCCGTCAGCTACGAAGTCACGCTGGAGCCCACCAGCCGTCCATGGC TTTTTGTGATGGAAGCCGCAGCCCAGAGCCCGGTGTTGCCGGGCTATCGAAGCGTCATGCAGGCCGACCTGCAATGGACG GTGAATCGTCCGATCACCGACCTTGTTCGCTACAAGGCACAGAGCTACCCAATCTTTCGGCATGGGCCGACGCGGCCGGT CTTCGGGTTGCGGGAGTTTGTGGCGTTGCCCCCCGGCTTCAATCCGCGCACCCTCGCGCTGGCCAACGAGATACGCAGTG ACCCGCGCTACCGAAACGCCAGCAATGCCCAACTGGTTCAGCTCGTGCTGGATCGCCTGCGCAGCGGCTACACCTACACC CTGGAGCCCGGCGTGTATGGCCAGCACACGGCCGATGAATTCTGGTTTGACCGCAAGGAGGGTTTTTGTGAACACATCGC ATCGGCCTTTGTGATCCTGATGCGGGCGATGGATATCCCCGCGCGCATCGTGACCGGCTACCAGGGCGGTGAATTGAACG GGGTGGATGGCTTCTGGGTGGTGCGGCAAAGCGACGCCCATGCCTGGGCAGAAGTCTGGCAAGAGGACCGCGGCTGGGTA CGGGTCGACCCGACCTCGGCGGTTGCCCCCGGGCGCACCGGCGCCTTCCAGCGGCTCGCTGCGCCCCAGGGCGTAGTGGC CCAGACACTGGGAAACATCAGCCCGACGCTGGCGGCGCAGCTGCGCGCCACCTGGGAAGCGGTCAACAACGGCTGGAACC AGTGGGTGCTCAACTACACCCAGGGCAAGCAGCTCAACCTGCTCAAGGAGATCGGCTTTGACTCCCCGAGCTGGGAGGAT TTGAGCTACGTTCTGCTGGGCATCATCGTGCTGGCGGCACTGCTGGGCGCCGCCTGGACGCTGTGGGACCGCACCCAGCA CGACCCGTGGCTGCGCCTGCTGGCCCGCGCACGCAGGCGGCTCGCCAAAGCCGGTATAGACAGCACCCCGGCCACCCCGC CGCGCCAGCTGGCGCAGCAGGTGCTGGCACGCTATGGCGGCGGAAGCGGCAGCCCGGGGCAGGCACTGCACGACTGGCTG ATGCAGCTGGAGCTGCAGCGCTACGCGGCGACGTCTTCCGGCCAGCGCAGCCAGCGCCGGGAAATCAGGCGCTTGCGGCA GCAATGGAGCGCGCTGGCATGGCCTGCTTAA
Upstream 100 bases:
>100_bases CTACCCCCGGCCAGCAGCCCTCAGCAGAGACCCAAAAAACCCCGCGGCAAAGACGATACCCGATCAGCGGCTCGGGCAGC CAGCAGGAGCAGGAGCAGCG
Downstream 100 bases:
>100_bases AATTGAAGCATCGCCCCGTTTTCTCCTCATGAAGCCTCAGATGCCTCTTTACAAGTTCAGTTTTGCGCTGGTTTTGATAA CCGTCCTCGCCGGCACGGCA
Product: transglutaminase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 676; Mature: 676
Protein sequence:
>676_residues MLTRLTTLPREARDTLFLLLVIAWVLLPQVGNLPLWCSALAGAVLVWRGWLTLQSRPLPGKWWLVGLLALTIAATLMTHR TLLGRDAGVTLLVVLLTLKTLELRARRDAFVVFFLGFFCMLSNFFYSQSLLTAASMLLGLLGLLTVLVNAHMPVGKPPLA LAARTAGGMVLLGAPIMVVLFLLFPRLAPLWGVPSDAMTGRSGLSASMQVGNIATLALDDSVAMRIRFEGRPPPQQDLYF RGPVMSSFDGREWRPPLFNFSPRGGQGGVGSNLSVAGAPVSYEVTLEPTSRPWLFVMEAAAQSPVLPGYRSVMQADLQWT VNRPITDLVRYKAQSYPIFRHGPTRPVFGLREFVALPPGFNPRTLALANEIRSDPRYRNASNAQLVQLVLDRLRSGYTYT LEPGVYGQHTADEFWFDRKEGFCEHIASAFVILMRAMDIPARIVTGYQGGELNGVDGFWVVRQSDAHAWAEVWQEDRGWV RVDPTSAVAPGRTGAFQRLAAPQGVVAQTLGNISPTLAAQLRATWEAVNNGWNQWVLNYTQGKQLNLLKEIGFDSPSWED LSYVLLGIIVLAALLGAAWTLWDRTQHDPWLRLLARARRRLAKAGIDSTPATPPRQLAQQVLARYGGGSGSPGQALHDWL MQLELQRYAATSSGQRSQRREIRRLRQQWSALAWPA
Sequences:
>Translated_676_residues MLTRLTTLPREARDTLFLLLVIAWVLLPQVGNLPLWCSALAGAVLVWRGWLTLQSRPLPGKWWLVGLLALTIAATLMTHR TLLGRDAGVTLLVVLLTLKTLELRARRDAFVVFFLGFFCMLSNFFYSQSLLTAASMLLGLLGLLTVLVNAHMPVGKPPLA LAARTAGGMVLLGAPIMVVLFLLFPRLAPLWGVPSDAMTGRSGLSASMQVGNIATLALDDSVAMRIRFEGRPPPQQDLYF RGPVMSSFDGREWRPPLFNFSPRGGQGGVGSNLSVAGAPVSYEVTLEPTSRPWLFVMEAAAQSPVLPGYRSVMQADLQWT VNRPITDLVRYKAQSYPIFRHGPTRPVFGLREFVALPPGFNPRTLALANEIRSDPRYRNASNAQLVQLVLDRLRSGYTYT LEPGVYGQHTADEFWFDRKEGFCEHIASAFVILMRAMDIPARIVTGYQGGELNGVDGFWVVRQSDAHAWAEVWQEDRGWV RVDPTSAVAPGRTGAFQRLAAPQGVVAQTLGNISPTLAAQLRATWEAVNNGWNQWVLNYTQGKQLNLLKEIGFDSPSWED LSYVLLGIIVLAALLGAAWTLWDRTQHDPWLRLLARARRRLAKAGIDSTPATPPRQLAQQVLARYGGGSGSPGQALHDWL MQLELQRYAATSSGQRSQRREIRRLRQQWSALAWPA >Mature_676_residues MLTRLTTLPREARDTLFLLLVIAWVLLPQVGNLPLWCSALAGAVLVWRGWLTLQSRPLPGKWWLVGLLALTIAATLMTHR TLLGRDAGVTLLVVLLTLKTLELRARRDAFVVFFLGFFCMLSNFFYSQSLLTAASMLLGLLGLLTVLVNAHMPVGKPPLA LAARTAGGMVLLGAPIMVVLFLLFPRLAPLWGVPSDAMTGRSGLSASMQVGNIATLALDDSVAMRIRFEGRPPPQQDLYF RGPVMSSFDGREWRPPLFNFSPRGGQGGVGSNLSVAGAPVSYEVTLEPTSRPWLFVMEAAAQSPVLPGYRSVMQADLQWT VNRPITDLVRYKAQSYPIFRHGPTRPVFGLREFVALPPGFNPRTLALANEIRSDPRYRNASNAQLVQLVLDRLRSGYTYT LEPGVYGQHTADEFWFDRKEGFCEHIASAFVILMRAMDIPARIVTGYQGGELNGVDGFWVVRQSDAHAWAEVWQEDRGWV RVDPTSAVAPGRTGAFQRLAAPQGVVAQTLGNISPTLAAQLRATWEAVNNGWNQWVLNYTQGKQLNLLKEIGFDSPSWED LSYVLLGIIVLAALLGAAWTLWDRTQHDPWLRLLARARRRLAKAGIDSTPATPPRQLAQQVLARYGGGSGSPGQALHDWL MQLELQRYAATSSGQRSQRREIRRLRQQWSALAWPA
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002931 [H]
Pfam domain/function: PF01841 Transglut_core [H]
EC number: NA
Molecular weight: Translated: 74843; Mature: 74843
Theoretical pI: Translated: 10.59; Mature: 10.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTRLTTLPREARDTLFLLLVIAWVLLPQVGNLPLWCSALAGAVLVWRGWLTLQSRPLPG CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCC KWWLVGLLALTIAATLMTHRTLLGRDAGVTLLVVLLTLKTLELRARRDAFVVFFLGFFCM HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LSNFFYSQSLLTAASMLLGLLGLLTVLVNAHMPVGKPPLALAARTAGGMVLLGAPIMVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHH FLLFPRLAPLWGVPSDAMTGRSGLSASMQVGNIATLALDDSVAMRIRFEGRPPPQQDLYF HHHHHHHHHHCCCCCHHHCCCCCCCCCEECCCEEEEEECCCEEEEEEECCCCCCCCCCEE RGPVMSSFDGREWRPPLFNFSPRGGQGGVGSNLSVAGAPVSYEVTLEPTSRPWLFVMEAA ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCEEEEEEHH AQSPVLPGYRSVMQADLQWTVNRPITDLVRYKAQSYPIFRHGPTRPVFGLREFVALPPGF CCCCCCCHHHHHHHHHHHEECCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCC NPRTLALANEIRSDPRYRNASNAQLVQLVLDRLRSGYTYTLEPGVYGQHTADEFWFDRKE CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHCHHH GFCEHIASAFVILMRAMDIPARIVTGYQGGELNGVDGFWVVRQSDAHAWAEVWQEDRGWV HHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCEE RVDPTSAVAPGRTGAFQRLAAPQGVVAQTLGNISPTLAAQLRATWEAVNNGWNQWVLNYT EECCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECC QGKQLNLLKEIGFDSPSWEDLSYVLLGIIVLAALLGAAWTLWDRTQHDPWLRLLARARRR CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LAKAGIDSTPATPPRQLAQQVLARYGGGSGSPGQALHDWLMQLELQRYAATSSGQRSQRR HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH EIRRLRQQWSALAWPA HHHHHHHHHHHCCCCC >Mature Secondary Structure MLTRLTTLPREARDTLFLLLVIAWVLLPQVGNLPLWCSALAGAVLVWRGWLTLQSRPLPG CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCC KWWLVGLLALTIAATLMTHRTLLGRDAGVTLLVVLLTLKTLELRARRDAFVVFFLGFFCM HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LSNFFYSQSLLTAASMLLGLLGLLTVLVNAHMPVGKPPLALAARTAGGMVLLGAPIMVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHH FLLFPRLAPLWGVPSDAMTGRSGLSASMQVGNIATLALDDSVAMRIRFEGRPPPQQDLYF HHHHHHHHHHCCCCCHHHCCCCCCCCCEECCCEEEEEECCCEEEEEEECCCCCCCCCCEE RGPVMSSFDGREWRPPLFNFSPRGGQGGVGSNLSVAGAPVSYEVTLEPTSRPWLFVMEAA ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCEEEEEEHH AQSPVLPGYRSVMQADLQWTVNRPITDLVRYKAQSYPIFRHGPTRPVFGLREFVALPPGF CCCCCCCHHHHHHHHHHHEECCCCHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCC NPRTLALANEIRSDPRYRNASNAQLVQLVLDRLRSGYTYTLEPGVYGQHTADEFWFDRKE CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHCHHH GFCEHIASAFVILMRAMDIPARIVTGYQGGELNGVDGFWVVRQSDAHAWAEVWQEDRGWV HHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCEE RVDPTSAVAPGRTGAFQRLAAPQGVVAQTLGNISPTLAAQLRATWEAVNNGWNQWVLNYT EECCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECC QGKQLNLLKEIGFDSPSWEDLSYVLLGIIVLAALLGAAWTLWDRTQHDPWLRLLARARRR CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LAKAGIDSTPATPPRQLAQQVLARYGGGSGSPGQALHDWLMQLELQRYAATSSGQRSQRR HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH EIRRLRQQWSALAWPA HHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969499; 9384377 [H]