| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788935
Identifier: 91788935
GI number: 91788935
Start: 3242550
End: 3243413
Strand: Direct
Name: 91788935
Synonym: Bpro_3075
Alternate gene names: NA
Gene position: 3242550-3243413 (Clockwise)
Preceding gene: 91788934
Following gene: 91788948
Centisome position: 62.35
GC content: 60.53
Gene sequence:
>864_bases ATGGACCAAACACAAGACTTATCGGTAAACCGGCTGGCCGATGCCTGGGCGGAGTTGCAGGCGCATTCCAACCAGGGCTA TCCCCTCCATGCCGATGCCAACCGGCTGGCATTTGCCGACCCGGAATTCCTGCTCCGGCGCGAAACCCGCGGTATCCGTT TTCAGCTGGAGTTGCTCAAACCTGACCTGGAGCAGCAGGAACAAGGCATTGAAAACACCATTGTGGTGTTCGGCAGTGCG CGATTCCCGCCGCCTGAACAGGCCAGCGCCAGCGTCAAACTGGCCGAGGAGAGTGGCGACGAGGAAGCGCTCCTGCTGGC TCGCCGCCATGCGCGCAATGCGCACTATTACGACCAGGCACGCCTGTTCGCGCGCCTGGTTGCGACCTACAGCAACCATC GCCCGCCCTCCGAGCAACTCTTCATCTGCACCGGCGGCGGCCCGGGCATCATGGAGGCAGCCAACCGCGGTGCCCAGGAA ATGGGCGCGCTGACCGTGGGACTCAATATTGTGCTGCCCCACGAGCAGTCGGCCAACCCCTACATCTCACCCTCGGTGAA CTTCAAGTTCCACTATTTCGCATTGCGCAAGATGCATTTCATGATGCGTGCCAAGGCACTGGTGGCTTTTCCGGGGGGGT TCGGAACGCTCGATGAACTGTTCGAGGTCATCACGCTGGTGCAAACCGGCAAGGCCAAGCCGGTGCCCATCGTGCTCTTC GGCTCCGAGTACTGGAAGCGGCTCTTCAACTTTGACGTGCTGATCGAAGAAGGCGCGATTGCGCCGGAAGACCTCAAGCT GTTCCAGTATGTCGACGAACCGCAGGCCGCCTGGGACGCCATCAAGGATTTTTACCACCTCTAA
Upstream 100 bases:
>100_bases CAAGCGCGTCTAAAAAGAATGAGGGCTTGCCGTCGGCTCAAAAAGGCTCCTCACGGAGCCTTTTTTACTTGGCGGCCGCT CCAATCGTTCACAATGGCTT
Downstream 100 bases:
>100_bases GCGGGGCGCCTCCACGCTCGCCCTGCGGGGCTAAACCCTTGGGGATACCGGCGCACCAACGCGGGTCTGGCGGAAATTGC CTTTGGATCTCGCGCAGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MDQTQDLSVNRLADAWAELQAHSNQGYPLHADANRLAFADPEFLLRRETRGIRFQLELLKPDLEQQEQGIENTIVVFGSA RFPPPEQASASVKLAEESGDEEALLLARRHARNAHYYDQARLFARLVATYSNHRPPSEQLFICTGGGPGIMEAANRGAQE MGALTVGLNIVLPHEQSANPYISPSVNFKFHYFALRKMHFMMRAKALVAFPGGFGTLDELFEVITLVQTGKAKPVPIVLF GSEYWKRLFNFDVLIEEGAIAPEDLKLFQYVDEPQAAWDAIKDFYHL
Sequences:
>Translated_287_residues MDQTQDLSVNRLADAWAELQAHSNQGYPLHADANRLAFADPEFLLRRETRGIRFQLELLKPDLEQQEQGIENTIVVFGSA RFPPPEQASASVKLAEESGDEEALLLARRHARNAHYYDQARLFARLVATYSNHRPPSEQLFICTGGGPGIMEAANRGAQE MGALTVGLNIVLPHEQSANPYISPSVNFKFHYFALRKMHFMMRAKALVAFPGGFGTLDELFEVITLVQTGKAKPVPIVLF GSEYWKRLFNFDVLIEEGAIAPEDLKLFQYVDEPQAAWDAIKDFYHL >Mature_287_residues MDQTQDLSVNRLADAWAELQAHSNQGYPLHADANRLAFADPEFLLRRETRGIRFQLELLKPDLEQQEQGIENTIVVFGSA RFPPPEQASASVKLAEESGDEEALLLARRHARNAHYYDQARLFARLVATYSNHRPPSEQLFICTGGGPGIMEAANRGAQE MGALTVGLNIVLPHEQSANPYISPSVNFKFHYFALRKMHFMMRAKALVAFPGGFGTLDELFEVITLVQTGKAKPVPIVLF GSEYWKRLFNFDVLIEEGAIAPEDLKLFQYVDEPQAAWDAIKDFYHL
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32305; Mature: 32305
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQTQDLSVNRLADAWAELQAHSNQGYPLHADANRLAFADPEFLLRRETRGIRFQLELLK CCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEECCHHHHHHHHCCCEEEEEEECC PDLEQQEQGIENTIVVFGSARFPPPEQASASVKLAEESGDEEALLLARRHARNAHYYDQA CCHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHH RLFARLVATYSNHRPPSEQLFICTGGGPGIMEAANRGAQEMGALTVGLNIVLPHEQSANP HHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCHHHHCEEEEEEEEEECCCCCCCC YISPSVNFKFHYFALRKMHFMMRAKALVAFPGGFGTLDELFEVITLVQTGKAKPVPIVLF EECCCCCEEEHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEE GSEYWKRLFNFDVLIEEGAIAPEDLKLFQYVDEPQAAWDAIKDFYHL CHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure MDQTQDLSVNRLADAWAELQAHSNQGYPLHADANRLAFADPEFLLRRETRGIRFQLELLK CCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEECCHHHHHHHHCCCEEEEEEECC PDLEQQEQGIENTIVVFGSARFPPPEQASASVKLAEESGDEEALLLARRHARNAHYYDQA CCHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHH RLFARLVATYSNHRPPSEQLFICTGGGPGIMEAANRGAQEMGALTVGLNIVLPHEQSANP HHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCHHHHCEEEEEEEEEECCCCCCCC YISPSVNFKFHYFALRKMHFMMRAKALVAFPGGFGTLDELFEVITLVQTGKAKPVPIVLF EECCCCCEEEHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEE GSEYWKRLFNFDVLIEEGAIAPEDLKLFQYVDEPQAAWDAIKDFYHL CHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA