| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is ygiF [H]
Identifier: 91788778
GI number: 91788778
Start: 3081869
End: 3083395
Strand: Direct
Name: ygiF [H]
Synonym: Bpro_2918
Alternate gene names: 91788778
Gene position: 3081869-3083395 (Clockwise)
Preceding gene: 91788777
Following gene: 91788779
Centisome position: 59.26
GC content: 66.4
Gene sequence:
>1527_bases ATGGCTTATTGCGTGCTCCTGCTGAATGCGACGGCAATGGAAATCGAACTCAAGCTGCGTTTGCCCCCGTCTGCGCTCGA TGCGCTGCGGGCCGATCCACTGCTGGCGCCCGTCCGTGCGACCCACAAGCAGCTCGACAACATCTACTTCGACACACCGC AGCGCAGACTGGCGCGCGCCGGCATCGCGCTGCGCCTGCGTCGCGACGGCAGGCGCTGGCTGCAGACTGTCAAGGGCGGC AGTAACAGCCAGGCCGGCTTGCACCAGCGCGAAGAAATCGAGTTCAGCGTGGCTGGCCCGGCCCTCGAATGGAAGCCGCT GGCTGGCACGGCTTTCGAGCCCGTCCTCAAACCGCTGAAGAACCAGCTGGATGTCCAATTTCGAACCCGCTTCAAGCGCG AGATCCGGCAGCTGCGCGGGGCTACGGGCGCGGAGATCGAGCTGGCCATCGATCAGGGGGAAATTCTTGCCGGCAGCCAT AGTGAGCCCCTGTGCGAAGTAGAGATGGAGCTCCTCAACGGTTCAGTCGATGACCTGTTCACGCTGGCCCTGCAGTTGGC CGAACGCCACCCGCTGGTACTGGATAGCCGCAGCAAGGCAGAGCGCGGCAGCCGGTTGGCCCAAGGCGCGCCGCTGGCAC CGCCCGTCAAGGCAGCCATGCCGCAGTTGCCCCCGGATGCCGGCGCACAAACAGTGGCACGCCTGGCCATTGAAGAATGC CTCGCCCACTGGCAGGCCAACGAAGCAGGCTTTCTGGCTCAACCCGGCAACAGCGAATACCTGCACCAGGTACGCGTCGC GGTGCGGCGCTTGCGTGTGGCCTGCGGTCCGCTGGCCCGTGCAGCCCACTGGCGCAATGAAGCGCTCACACCGGCTAGAA GCAGCCTGCGCGAGCTGGGCCAGCGGTTGGGCGCGGCGCGTGATTGGGATGTGTTCATCGAAGAAACCTGGCCACAGCTG GCCAGCCACCTGAACGACGCTGCAGCGCGTCAAGCCCTGCAGGAGACTGCAGAGCTGCTGCGTGACACCGCCCGCCTGCA GGCCCGGGCTGCATTGGAAGGGCGAGAGACCCAGCGCCTGTTGCTGCAACTGGGCCGATGCCTGGCGCGACCGGACGATG CCGCCACCCATTCACCGGACGATCTCACAGCCCGGCTGGACCAACTCGACCACACGCTGCGGCGGGCGTTGCCCAGGCTT GCACGCCTGAGCCCGGCGCGTCTGCACCGCTTGCGCATCGCGGCCAAGAAGCTGCGCTATCTGACCGAGTTCGTCGGCAG CCGCTACAACCTCGGCGCCGTCGACGACTGGCTGGCGTGGCTGAAGCACGCGCAAACCATCTTCGGCGGGCGCAACGACC AGGTGGTGGCGCAAACACGAATCGAGGCCCTGTGCGCCAGCGCGGAGCCCCCATCAAACAAGGCCCATCACGCGCTCCTG GCGGCGCTGCGCAAACAGCCTCTGCCCGATCTCTGCCTGCCGCCGCTTCCCGAGGCTTATTGGCGGAAGAAAACGGCCTC CCCATAA
Upstream 100 bases:
>100_bases GGCGGGGCCTGCCTGCGGCCTTGAACCCCGGTAGCCGCGCAGCATCATTCGGTCGCAGGCCTTTCGGCAGGCCTCGCCCT TGTCGACGCATCGCAGTACC
Downstream 100 bases:
>100_bases CAGGACTCACCAAGCGGGTGTAGTTCAATGCCAGAACTGAGCCCTCCTCTATAAATGGCATTTTTTAATAACTACCTACG CCCAAACCTGCGCCACGTGA
Product: adenylate cyclase
Products: NA
Alternate protein names: ORFXE [H]
Number of amino acids: Translated: 508; Mature: 507
Protein sequence:
>508_residues MAYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARAGIALRLRRDGRRWLQTVKGG SNSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLKNQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSH SEPLCEVEMELLNGSVDDLFTLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEEC LAHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELGQRLGAARDWDVFIEETWPQL ASHLNDAAARQALQETAELLRDTARLQARAALEGRETQRLLLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRL ARLSPARLHRLRIAAKKLRYLTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALL AALRKQPLPDLCLPPLPEAYWRKKTASP
Sequences:
>Translated_508_residues MAYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARAGIALRLRRDGRRWLQTVKGG SNSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLKNQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSH SEPLCEVEMELLNGSVDDLFTLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEEC LAHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELGQRLGAARDWDVFIEETWPQL ASHLNDAAARQALQETAELLRDTARLQARAALEGRETQRLLLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRL ARLSPARLHRLRIAAKKLRYLTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALL AALRKQPLPDLCLPPLPEAYWRKKTASP >Mature_507_residues AYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARAGIALRLRRDGRRWLQTVKGGS NSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLKNQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSHS EPLCEVEMELLNGSVDDLFTLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEECL AHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELGQRLGAARDWDVFIEETWPQLA SHLNDAAARQALQETAELLRDTARLQARAALEGRETQRLLLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRLA RLSPARLHRLRIAAKKLRYLTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALLA ALRKQPLPDLCLPPLPEAYWRKKTASP
Specific function: Unknown
COG id: COG3025
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_1598 [H]
Homologues:
Organism=Escherichia coli, GI1789434, Length=266, Percent_Identity=35.3383458646617, Blast_Score=114, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008172 - InterPro: IPR004206 [H]
Pfam domain/function: PF01928 CYTH [H]
EC number: NA
Molecular weight: Translated: 56424; Mature: 56293
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARA CEEEEEEECCCEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH GIALRLRRDGRRWLQTVKGGSNSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLK CHHEEEHHHHHHHHHHHCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHH NQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSHSEPLCEVEMELLNGSVDDLF HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHCCCHHHHH TLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEEC HHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH LAHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELG HHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH QRLGAARDWDVFIEETWPQLASHLNDAAARQALQETAELLRDTARLQARAALEGRETQRL HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRLARLSPARLHRLRIAAKKLRY HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALL HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH AALRKQPLPDLCLPPLPEAYWRKKTASP HHHHHCCCCCCCCCCCCHHHHCCCCCCC >Mature Secondary Structure AYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARA EEEEEEECCCEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH GIALRLRRDGRRWLQTVKGGSNSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLK CHHEEEHHHHHHHHHHHCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHH NQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSHSEPLCEVEMELLNGSVDDLF HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHCCCHHHHH TLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEEC HHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH LAHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELG HHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH QRLGAARDWDVFIEETWPQLASHLNDAAARQALQETAELLRDTARLQARAALEGRETQRL HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRLARLSPARLHRLRIAAKKLRY HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALL HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH AALRKQPLPDLCLPPLPEAYWRKKTASP HHHHHCCCCCCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412694; 9278503 [H]