Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is ygiF [H]

Identifier: 91788778

GI number: 91788778

Start: 3081869

End: 3083395

Strand: Direct

Name: ygiF [H]

Synonym: Bpro_2918

Alternate gene names: 91788778

Gene position: 3081869-3083395 (Clockwise)

Preceding gene: 91788777

Following gene: 91788779

Centisome position: 59.26

GC content: 66.4

Gene sequence:

>1527_bases
ATGGCTTATTGCGTGCTCCTGCTGAATGCGACGGCAATGGAAATCGAACTCAAGCTGCGTTTGCCCCCGTCTGCGCTCGA
TGCGCTGCGGGCCGATCCACTGCTGGCGCCCGTCCGTGCGACCCACAAGCAGCTCGACAACATCTACTTCGACACACCGC
AGCGCAGACTGGCGCGCGCCGGCATCGCGCTGCGCCTGCGTCGCGACGGCAGGCGCTGGCTGCAGACTGTCAAGGGCGGC
AGTAACAGCCAGGCCGGCTTGCACCAGCGCGAAGAAATCGAGTTCAGCGTGGCTGGCCCGGCCCTCGAATGGAAGCCGCT
GGCTGGCACGGCTTTCGAGCCCGTCCTCAAACCGCTGAAGAACCAGCTGGATGTCCAATTTCGAACCCGCTTCAAGCGCG
AGATCCGGCAGCTGCGCGGGGCTACGGGCGCGGAGATCGAGCTGGCCATCGATCAGGGGGAAATTCTTGCCGGCAGCCAT
AGTGAGCCCCTGTGCGAAGTAGAGATGGAGCTCCTCAACGGTTCAGTCGATGACCTGTTCACGCTGGCCCTGCAGTTGGC
CGAACGCCACCCGCTGGTACTGGATAGCCGCAGCAAGGCAGAGCGCGGCAGCCGGTTGGCCCAAGGCGCGCCGCTGGCAC
CGCCCGTCAAGGCAGCCATGCCGCAGTTGCCCCCGGATGCCGGCGCACAAACAGTGGCACGCCTGGCCATTGAAGAATGC
CTCGCCCACTGGCAGGCCAACGAAGCAGGCTTTCTGGCTCAACCCGGCAACAGCGAATACCTGCACCAGGTACGCGTCGC
GGTGCGGCGCTTGCGTGTGGCCTGCGGTCCGCTGGCCCGTGCAGCCCACTGGCGCAATGAAGCGCTCACACCGGCTAGAA
GCAGCCTGCGCGAGCTGGGCCAGCGGTTGGGCGCGGCGCGTGATTGGGATGTGTTCATCGAAGAAACCTGGCCACAGCTG
GCCAGCCACCTGAACGACGCTGCAGCGCGTCAAGCCCTGCAGGAGACTGCAGAGCTGCTGCGTGACACCGCCCGCCTGCA
GGCCCGGGCTGCATTGGAAGGGCGAGAGACCCAGCGCCTGTTGCTGCAACTGGGCCGATGCCTGGCGCGACCGGACGATG
CCGCCACCCATTCACCGGACGATCTCACAGCCCGGCTGGACCAACTCGACCACACGCTGCGGCGGGCGTTGCCCAGGCTT
GCACGCCTGAGCCCGGCGCGTCTGCACCGCTTGCGCATCGCGGCCAAGAAGCTGCGCTATCTGACCGAGTTCGTCGGCAG
CCGCTACAACCTCGGCGCCGTCGACGACTGGCTGGCGTGGCTGAAGCACGCGCAAACCATCTTCGGCGGGCGCAACGACC
AGGTGGTGGCGCAAACACGAATCGAGGCCCTGTGCGCCAGCGCGGAGCCCCCATCAAACAAGGCCCATCACGCGCTCCTG
GCGGCGCTGCGCAAACAGCCTCTGCCCGATCTCTGCCTGCCGCCGCTTCCCGAGGCTTATTGGCGGAAGAAAACGGCCTC
CCCATAA

Upstream 100 bases:

>100_bases
GGCGGGGCCTGCCTGCGGCCTTGAACCCCGGTAGCCGCGCAGCATCATTCGGTCGCAGGCCTTTCGGCAGGCCTCGCCCT
TGTCGACGCATCGCAGTACC

Downstream 100 bases:

>100_bases
CAGGACTCACCAAGCGGGTGTAGTTCAATGCCAGAACTGAGCCCTCCTCTATAAATGGCATTTTTTAATAACTACCTACG
CCCAAACCTGCGCCACGTGA

Product: adenylate cyclase

Products: NA

Alternate protein names: ORFXE [H]

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MAYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARAGIALRLRRDGRRWLQTVKGG
SNSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLKNQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSH
SEPLCEVEMELLNGSVDDLFTLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEEC
LAHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELGQRLGAARDWDVFIEETWPQL
ASHLNDAAARQALQETAELLRDTARLQARAALEGRETQRLLLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRL
ARLSPARLHRLRIAAKKLRYLTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALL
AALRKQPLPDLCLPPLPEAYWRKKTASP

Sequences:

>Translated_508_residues
MAYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARAGIALRLRRDGRRWLQTVKGG
SNSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLKNQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSH
SEPLCEVEMELLNGSVDDLFTLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEEC
LAHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELGQRLGAARDWDVFIEETWPQL
ASHLNDAAARQALQETAELLRDTARLQARAALEGRETQRLLLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRL
ARLSPARLHRLRIAAKKLRYLTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALL
AALRKQPLPDLCLPPLPEAYWRKKTASP
>Mature_507_residues
AYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARAGIALRLRRDGRRWLQTVKGGS
NSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLKNQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSHS
EPLCEVEMELLNGSVDDLFTLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEECL
AHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELGQRLGAARDWDVFIEETWPQLA
SHLNDAAARQALQETAELLRDTARLQARAALEGRETQRLLLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRLA
RLSPARLHRLRIAAKKLRYLTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALLA
ALRKQPLPDLCLPPLPEAYWRKKTASP

Specific function: Unknown

COG id: COG3025

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1598 [H]

Homologues:

Organism=Escherichia coli, GI1789434, Length=266, Percent_Identity=35.3383458646617, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008172
- InterPro:   IPR004206 [H]

Pfam domain/function: PF01928 CYTH [H]

EC number: NA

Molecular weight: Translated: 56424; Mature: 56293

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARA
CEEEEEEECCCEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
GIALRLRRDGRRWLQTVKGGSNSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLK
CHHEEEHHHHHHHHHHHCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHH
NQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSHSEPLCEVEMELLNGSVDDLF
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHCCCHHHHH
TLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEEC
HHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
LAHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELG
HHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QRLGAARDWDVFIEETWPQLASHLNDAAARQALQETAELLRDTARLQARAALEGRETQRL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRLARLSPARLHRLRIAAKKLRY
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALL
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
AALRKQPLPDLCLPPLPEAYWRKKTASP
HHHHHCCCCCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
AYCVLLLNATAMEIELKLRLPPSALDALRADPLLAPVRATHKQLDNIYFDTPQRRLARA
EEEEEEECCCEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
GIALRLRRDGRRWLQTVKGGSNSQAGLHQREEIEFSVAGPALEWKPLAGTAFEPVLKPLK
CHHEEEHHHHHHHHHHHCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHHHHHHHH
NQLDVQFRTRFKREIRQLRGATGAEIELAIDQGEILAGSHSEPLCEVEMELLNGSVDDLF
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHCCCHHHHH
TLALQLAERHPLVLDSRSKAERGSRLAQGAPLAPPVKAAMPQLPPDAGAQTVARLAIEEC
HHHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
LAHWQANEAGFLAQPGNSEYLHQVRVAVRRLRVACGPLARAAHWRNEALTPARSSLRELG
HHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QRLGAARDWDVFIEETWPQLASHLNDAAARQALQETAELLRDTARLQARAALEGRETQRL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LLQLGRCLARPDDAATHSPDDLTARLDQLDHTLRRALPRLARLSPARLHRLRIAAKKLRY
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LTEFVGSRYNLGAVDDWLAWLKHAQTIFGGRNDQVVAQTRIEALCASAEPPSNKAHHALL
HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
AALRKQPLPDLCLPPLPEAYWRKKTASP
HHHHHCCCCCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8412694; 9278503 [H]