| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is frc [H]
Identifier: 91788663
GI number: 91788663
Start: 2942752
End: 2944023
Strand: Direct
Name: frc [H]
Synonym: Bpro_2801
Alternate gene names: 91788663
Gene position: 2942752-2944023 (Clockwise)
Preceding gene: 91788662
Following gene: 91788664
Centisome position: 56.59
GC content: 62.66
Gene sequence:
>1272_bases ATGTCAAACAAACCACTCAACGGCATAAAAATTATTGACTTCACCCACGTCCAGGCCGGTCCCGCGTGCACGCAGCTGCT GGCGTGGTTCGGTGCCGACGTCATCAAGGTCGAACGCCCGGGTTCCGGCGACGTCACCCGCAGCCAGCTGCGCGACATCC CCGAGGCTGATGCGCTGTACTTCACCATGCTCAACAGCAACAAGCGCGGTCTGACGCTGGACACCAAGAAGGCCGAAGGC AAGGAGGTGCTCGAGCGGCTGATCAAGGAATCCGACGTCATGGTCGAGAACTTCGGACCCGGCGCGCTGGACCGCATGGG CTTCACCTGGGAGTACATCCAGAAGCTCAACCCCAAGATGATCCTGGCTTCGGTCAAGGGCTTCAGCGAAGGCCACCACT ACGAAGACCTCAAGGTCTACGAGAACGTGGCCCAGTGCGCCGGCGGCGCCGCCTCCACCACCGGCTGGTGGAAGGGCGAG AACTCCGAGCCCACGATTTCCGCTGCTGCCCTGGGTGACACCAACACCGGCATGCACCTGGCCATCGGCATCCTGACGGC AATCATCGGCCGCCAGCAGACCGGCAAGGGCCAGAAGGTGGCCGTGGCCATGCAGGACGCCGTGCTGAACCTGTGCCGCG TCAAGATGCGCGACCAGCAGCGCCTGGAGAAGGTGGGCTACCTCGAGGAATACCCGCAGTACCCGCACGAGATGGAAGCT TTCGCCGACAAGGTGACGCCGCGCGGCGGCAATGCCGGCGGCGGCGGCCAGCCGGGCTGGATCCTGAAGTGCAAGGGCTG GGAAACCGACCCCAACGCCTACATCTACTTCACGGTCCAGGGCCACGCCTGGGAGCCGATCTGCGACGCACTGGGCAAAC CAGAGTGGAAGACCGATCCGGCCTACAACACGCCCAAGGGTCGCCAGCCGCACATCATGGACATCTTCGCCACCATCGAA GACTTCATCAAGGACAAGACCAAGTTCGAAGCGGTCGACATCTTCCGCAAGTTCGACATTCCTTGCGCCCCGGTGCTGTC CATGAAGGAACTGCTGCGCGACGAGTCGCTGCGCAAGAGCGGCTCCATCGTCGAAGTGCCGCACAAGGTGCGCGGCAGCT ACTGGACCATCGGCAGCCCGATCAAGTTTTCCGACCTCAAGCCTGAAGTCACGGCGTCTCCCCTGCTGGGCGAGCACACC GACGAGGTGTTGGCCGAACTGGGCTATAGCAAGGACCAGATCGCAACAATGCACGCCAACAAGGCTGTCTAA
Upstream 100 bases:
>100_bases AGACAGCCGGCACCGAGAGCGGCCGCATCACCAGCCTGAACCCGCAAAGCGCGGCCAAAAAGAAGTAAATTAGCAAAGCA ATCCACTAGGAGTTATGAAG
Downstream 100 bases:
>100_bases AACGGTCATCTGAACAGCGACCCTTCAATGTGGAACGGCGCCCGACCCAGGCGCCGTCTTTACTTCAGAGACCTTTTTTC AGCACAAGGAGCAGGCCCAT
Product: formyl-coenzyme A transferase
Products: NA
Alternate protein names: Formyl-CoA transferase [H]
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MSNKPLNGIKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRSQLRDIPEADALYFTMLNSNKRGLTLDTKKAEG KEVLERLIKESDVMVENFGPGALDRMGFTWEYIQKLNPKMILASVKGFSEGHHYEDLKVYENVAQCAGGAASTTGWWKGE NSEPTISAAALGDTNTGMHLAIGILTAIIGRQQTGKGQKVAVAMQDAVLNLCRVKMRDQQRLEKVGYLEEYPQYPHEMEA FADKVTPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTVQGHAWEPICDALGKPEWKTDPAYNTPKGRQPHIMDIFATIE DFIKDKTKFEAVDIFRKFDIPCAPVLSMKELLRDESLRKSGSIVEVPHKVRGSYWTIGSPIKFSDLKPEVTASPLLGEHT DEVLAELGYSKDQIATMHANKAV
Sequences:
>Translated_423_residues MSNKPLNGIKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRSQLRDIPEADALYFTMLNSNKRGLTLDTKKAEG KEVLERLIKESDVMVENFGPGALDRMGFTWEYIQKLNPKMILASVKGFSEGHHYEDLKVYENVAQCAGGAASTTGWWKGE NSEPTISAAALGDTNTGMHLAIGILTAIIGRQQTGKGQKVAVAMQDAVLNLCRVKMRDQQRLEKVGYLEEYPQYPHEMEA FADKVTPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTVQGHAWEPICDALGKPEWKTDPAYNTPKGRQPHIMDIFATIE DFIKDKTKFEAVDIFRKFDIPCAPVLSMKELLRDESLRKSGSIVEVPHKVRGSYWTIGSPIKFSDLKPEVTASPLLGEHT DEVLAELGYSKDQIATMHANKAV >Mature_422_residues SNKPLNGIKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRSQLRDIPEADALYFTMLNSNKRGLTLDTKKAEGK EVLERLIKESDVMVENFGPGALDRMGFTWEYIQKLNPKMILASVKGFSEGHHYEDLKVYENVAQCAGGAASTTGWWKGEN SEPTISAAALGDTNTGMHLAIGILTAIIGRQQTGKGQKVAVAMQDAVLNLCRVKMRDQQRLEKVGYLEEYPQYPHEMEAF ADKVTPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTVQGHAWEPICDALGKPEWKTDPAYNTPKGRQPHIMDIFATIED FIKDKTKFEAVDIFRKFDIPCAPVLSMKELLRDESLRKSGSIVEVPHKVRGSYWTIGSPIKFSDLKPEVTASPLLGEHTD EVLAELGYSKDQIATMHANKAV
Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]
COG id: COG1804
COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]
Homologues:
Organism=Homo sapiens, GI300863128, Length=410, Percent_Identity=27.8048780487805, Blast_Score=154, Evalue=1e-37, Organism=Homo sapiens, GI42794625, Length=425, Percent_Identity=28, Blast_Score=142, Evalue=7e-34, Organism=Homo sapiens, GI266456254, Length=425, Percent_Identity=28, Blast_Score=142, Evalue=8e-34, Organism=Homo sapiens, GI300863124, Length=436, Percent_Identity=26.8348623853211, Blast_Score=141, Evalue=1e-33, Organism=Homo sapiens, GI300863126, Length=156, Percent_Identity=37.8205128205128, Blast_Score=108, Evalue=9e-24, Organism=Homo sapiens, GI266458393, Length=255, Percent_Identity=30.9803921568627, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI266458397, Length=255, Percent_Identity=30.9803921568627, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI13376042, Length=436, Percent_Identity=23.8532110091743, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI266458395, Length=160, Percent_Identity=35, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI42822893, Length=178, Percent_Identity=33.1460674157303, Blast_Score=93, Evalue=4e-19, Organism=Escherichia coli, GI1788717, Length=421, Percent_Identity=67.2209026128266, Blast_Score=560, Evalue=1e-161, Organism=Escherichia coli, GI87082093, Length=412, Percent_Identity=27.9126213592233, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1786222, Length=217, Percent_Identity=27.6497695852535, Blast_Score=81, Evalue=1e-16, Organism=Drosophila melanogaster, GI24648431, Length=428, Percent_Identity=30.8411214953271, Blast_Score=184, Evalue=7e-47, Organism=Drosophila melanogaster, GI24585488, Length=201, Percent_Identity=27.8606965174129, Blast_Score=87, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003673 - InterPro: IPR017659 [H]
Pfam domain/function: PF02515 CoA_transf_3 [H]
EC number: =2.8.3.16 [H]
Molecular weight: Translated: 46774; Mature: 46643
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKPLNGIKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRSQLRDIPEADALY CCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCCEEE FTMLNSNKRGLTLDTKKAEGKEVLERLIKESDVMVENFGPGALDRMGFTWEYIQKLNPKM EEEECCCCCCCEEECCCCCHHHHHHHHHHHCCEEEECCCCCHHHHCCCCHHHHHHCCCCE ILASVKGFSEGHHYEDLKVYENVAQCAGGAASTTGWWKGENSEPTISAAALGDTNTGMHL EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH AIGILTAIIGRQQTGKGQKVAVAMQDAVLNLCRVKMRDQQRLEKVGYLEEYPQYPHEMEA HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHH FADKVTPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTVQGHAWEPICDALGKPEWKTDP HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCC AYNTPKGRQPHIMDIFATIEDFIKDKTKFEAVDIFRKFDIPCAPVLSMKELLRDESLRKS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC GSIVEVPHKVRGSYWTIGSPIKFSDLKPEVTASPLLGEHTDEVLAELGYSKDQIATMHAN CCEEECCHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHEEEECCC KAV CCC >Mature Secondary Structure SNKPLNGIKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRSQLRDIPEADALY CCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCCEEE FTMLNSNKRGLTLDTKKAEGKEVLERLIKESDVMVENFGPGALDRMGFTWEYIQKLNPKM EEEECCCCCCCEEECCCCCHHHHHHHHHHHCCEEEECCCCCHHHHCCCCHHHHHHCCCCE ILASVKGFSEGHHYEDLKVYENVAQCAGGAASTTGWWKGENSEPTISAAALGDTNTGMHL EEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH AIGILTAIIGRQQTGKGQKVAVAMQDAVLNLCRVKMRDQQRLEKVGYLEEYPQYPHEMEA HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHH FADKVTPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTVQGHAWEPICDALGKPEWKTDP HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCC AYNTPKGRQPHIMDIFATIEDFIKDKTKFEAVDIFRKFDIPCAPVLSMKELLRDESLRKS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC GSIVEVPHKVRGSYWTIGSPIKFSDLKPEVTASPLLGEHTDEVLAELGYSKDQIATMHAN CCEEECCHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHEEEECCC KAV CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA