Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yadT [C]

Identifier: 91788633

GI number: 91788633

Start: 2913136

End: 2914128

Strand: Reverse

Name: yadT [C]

Synonym: Bpro_2771

Alternate gene names: 91788633

Gene position: 2914128-2913136 (Counterclockwise)

Preceding gene: 91788634

Following gene: 91788632

Centisome position: 56.04

GC content: 58.81

Gene sequence:

>993_bases
ATGCTGAATTCTGTCCCGCTTTTTAAACAACGCCCTGTGCAGCTCGCGCTTCACCGCGCAGCAAGCGCCATCTTGCTGGG
CTTGGGCCTTGGCTGCATGGCGCAGGCGCAAACATTCCCGGTGACGGTGGACAGCTGCGGGGAAAAGCTGGTGTTCAATG
CATCGCCCAAGGCCGCAATGATCCATGACCTCAACATGACGGATATGGCGCTGGCGCTCAAGCTCCAGAGTCAGATGGCC
GCCGTGTCCGGTATCACCGGCTGGTACAAGCCGACCCCGGAGTTCAAGAAGGCACTGGGCAGCATTCCCGAGGTGGCCCC
CAAGCAGCCGACCCTGGAAAACGTGCTGTCAGTCAAGCCGGACTTCTTCTTTGCCGGCTGGAACTACGGGATGAAGGTGG
GCGGCGACGTAACGCCTGCAACGCTGAAGAAGTACAACATTCCCACACTGGTGCTTAGCGAGAGCTGCGTGCACATTGAC
AAAACGCGCCCACGCGCTTCCATGGACCTGCTCTACACCGACTTCATCAAGCTAGGTACCATTTTTGGCAAACAGGCACA
AGCCACCGCTCAGGTGGCTGACTGGAAAAAGCAATTGGCTGCCTTGCCCAAGCCGGGGGGCAAAGAGCCGGTTCGCATGT
TCCTGTTTGACTCCGGGGAAGACAAACCTTTCACCGCCGGGCGCTTCGCCATTCCTACCGCCATGATGGAAACCGTGGGT
GGGCGCAACGTCATGGAGGACCTGGATACGAGCTGGGGCACCGTGTCCTGGGAAGCCGTGGCCGCACGCAATCCGGAGTT
TTTGGTCCTTCTTGACTACGCCAATGATGGTGGCGCGGAAAAGCTGTTGAAGTTTTTGCAAGCCCACCCGCTGATGCGGC
ACACCGACGCCGTGAAAAACAGGCGCTTCGTCGCGCTGCGCTATGAAGAGTTAACCCCTGGGCCCGCCAACATCACTGCC
ATCGAGAAAATGGCAAAGGCGCTCAAGCTTTGA

Upstream 100 bases:

>100_bases
GGGCGGGTGTCGCCCGTGGCAGTTTTTGAGTCACCCCGGCTTGCGCCCGCAAAGCGCATTCCCCCCACCTCTCAAGCACT
ATCCCTGGAGGGATCTCCCC

Downstream 100 bases:

>100_bases
TCACTTTGCCCCGCTCCTTCGGGTTGACAGCTGCGGTGCTTTGGGGCGTGCTGCTGGTCTTGTGTGTGGTGTCGGTGAAA
GCCGGCGCCGTGCCTGTGAG

Product: periplasmic-binding protein

Products: NA

Alternate protein names: Iron Transport Lipoprotein; Iron ABC Transporter; Transporter Subunit; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Vitamin; ABC Transporter

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAMIHDLNMTDMALALKLQSQMA
AVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKPDFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHID
KTRPRASMDLLYTDFIKLGTIFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG
GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKNRRFVALRYEELTPGPANITA
IEKMAKALKL

Sequences:

>Translated_330_residues
MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAMIHDLNMTDMALALKLQSQMA
AVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKPDFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHID
KTRPRASMDLLYTDFIKLGTIFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG
GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKNRRFVALRYEELTPGPANITA
IEKMAKALKL
>Mature_330_residues
MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAMIHDLNMTDMALALKLQSQMA
AVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKPDFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHID
KTRPRASMDLLYTDFIKLGTIFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG
GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKNRRFVALRYEELTPGPANITA
IEKMAKALKL

Specific function: Unknown

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36069; Mature: 36069

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAM
CCCCCCCHHCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCEEHHCCCCEEEECCCCCEEE
IHDLNMTDMALALKLQSQMAAVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKP
EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCC
DFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHIDKTRPRASMDLLYTDFIKLGT
CEEEECCCCCEEECCCCCHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHHHH
IFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCC
GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKN
CCHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCC
RRFVALRYEELTPGPANITAIEKMAKALKL
CEEEEEEEECCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAM
CCCCCCCHHCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCEEHHCCCCEEEECCCCCEEE
IHDLNMTDMALALKLQSQMAAVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKP
EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCC
DFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHIDKTRPRASMDLLYTDFIKLGT
CEEEECCCCCEEECCCCCHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHHHH
IFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCC
GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKN
CCHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCC
RRFVALRYEELTPGPANITAIEKMAKALKL
CEEEEEEEECCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA