| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yadT [C]
Identifier: 91788633
GI number: 91788633
Start: 2913136
End: 2914128
Strand: Reverse
Name: yadT [C]
Synonym: Bpro_2771
Alternate gene names: 91788633
Gene position: 2914128-2913136 (Counterclockwise)
Preceding gene: 91788634
Following gene: 91788632
Centisome position: 56.04
GC content: 58.81
Gene sequence:
>993_bases ATGCTGAATTCTGTCCCGCTTTTTAAACAACGCCCTGTGCAGCTCGCGCTTCACCGCGCAGCAAGCGCCATCTTGCTGGG CTTGGGCCTTGGCTGCATGGCGCAGGCGCAAACATTCCCGGTGACGGTGGACAGCTGCGGGGAAAAGCTGGTGTTCAATG CATCGCCCAAGGCCGCAATGATCCATGACCTCAACATGACGGATATGGCGCTGGCGCTCAAGCTCCAGAGTCAGATGGCC GCCGTGTCCGGTATCACCGGCTGGTACAAGCCGACCCCGGAGTTCAAGAAGGCACTGGGCAGCATTCCCGAGGTGGCCCC CAAGCAGCCGACCCTGGAAAACGTGCTGTCAGTCAAGCCGGACTTCTTCTTTGCCGGCTGGAACTACGGGATGAAGGTGG GCGGCGACGTAACGCCTGCAACGCTGAAGAAGTACAACATTCCCACACTGGTGCTTAGCGAGAGCTGCGTGCACATTGAC AAAACGCGCCCACGCGCTTCCATGGACCTGCTCTACACCGACTTCATCAAGCTAGGTACCATTTTTGGCAAACAGGCACA AGCCACCGCTCAGGTGGCTGACTGGAAAAAGCAATTGGCTGCCTTGCCCAAGCCGGGGGGCAAAGAGCCGGTTCGCATGT TCCTGTTTGACTCCGGGGAAGACAAACCTTTCACCGCCGGGCGCTTCGCCATTCCTACCGCCATGATGGAAACCGTGGGT GGGCGCAACGTCATGGAGGACCTGGATACGAGCTGGGGCACCGTGTCCTGGGAAGCCGTGGCCGCACGCAATCCGGAGTT TTTGGTCCTTCTTGACTACGCCAATGATGGTGGCGCGGAAAAGCTGTTGAAGTTTTTGCAAGCCCACCCGCTGATGCGGC ACACCGACGCCGTGAAAAACAGGCGCTTCGTCGCGCTGCGCTATGAAGAGTTAACCCCTGGGCCCGCCAACATCACTGCC ATCGAGAAAATGGCAAAGGCGCTCAAGCTTTGA
Upstream 100 bases:
>100_bases GGGCGGGTGTCGCCCGTGGCAGTTTTTGAGTCACCCCGGCTTGCGCCCGCAAAGCGCATTCCCCCCACCTCTCAAGCACT ATCCCTGGAGGGATCTCCCC
Downstream 100 bases:
>100_bases TCACTTTGCCCCGCTCCTTCGGGTTGACAGCTGCGGTGCTTTGGGGCGTGCTGCTGGTCTTGTGTGTGGTGTCGGTGAAA GCCGGCGCCGTGCCTGTGAG
Product: periplasmic-binding protein
Products: NA
Alternate protein names: Iron Transport Lipoprotein; Iron ABC Transporter; Transporter Subunit; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Vitamin; ABC Transporter
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAMIHDLNMTDMALALKLQSQMA AVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKPDFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHID KTRPRASMDLLYTDFIKLGTIFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKNRRFVALRYEELTPGPANITA IEKMAKALKL
Sequences:
>Translated_330_residues MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAMIHDLNMTDMALALKLQSQMA AVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKPDFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHID KTRPRASMDLLYTDFIKLGTIFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKNRRFVALRYEELTPGPANITA IEKMAKALKL >Mature_330_residues MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAMIHDLNMTDMALALKLQSQMA AVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKPDFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHID KTRPRASMDLLYTDFIKLGTIFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKNRRFVALRYEELTPGPANITA IEKMAKALKL
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36069; Mature: 36069
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAM CCCCCCCHHCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCEEHHCCCCEEEECCCCCEEE IHDLNMTDMALALKLQSQMAAVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKP EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCC DFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHIDKTRPRASMDLLYTDFIKLGT CEEEECCCCCEEECCCCCHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHHHH IFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCC GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKN CCHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCC RRFVALRYEELTPGPANITAIEKMAKALKL CEEEEEEEECCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MLNSVPLFKQRPVQLALHRAASAILLGLGLGCMAQAQTFPVTVDSCGEKLVFNASPKAAM CCCCCCCHHCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCEEHHCCCCEEEECCCCCEEE IHDLNMTDMALALKLQSQMAAVSGITGWYKPTPEFKKALGSIPEVAPKQPTLENVLSVKP EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCC DFFFAGWNYGMKVGGDVTPATLKKYNIPTLVLSESCVHIDKTRPRASMDLLYTDFIKLGT CEEEECCCCCEEECCCCCHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHHHHHHHHHH IFGKQAQATAQVADWKKQLAALPKPGGKEPVRMFLFDSGEDKPFTAGRFAIPTAMMETVG HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCC GRNVMEDLDTSWGTVSWEAVAARNPEFLVLLDYANDGGAEKLLKFLQAHPLMRHTDAVKN CCHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCC RRFVALRYEELTPGPANITAIEKMAKALKL CEEEEEEEECCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA