| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is yjeF [H]
Identifier: 91788560
GI number: 91788560
Start: 2839794
End: 2841365
Strand: Direct
Name: yjeF [H]
Synonym: Bpro_2698
Alternate gene names: 91788560
Gene position: 2839794-2841365 (Clockwise)
Preceding gene: 91788559
Following gene: 91788567
Centisome position: 54.61
GC content: 67.43
Gene sequence:
>1572_bases ATGCACCATCTGATGCACCATTCGATGCAGAAAATCACCAACGCCGTCAGCCAGCCGCTTTACAGCGTGGCAGCCACCCG CGAGCTTGAATTGCACGCAGCGGCCGGCCTGCCCCCGCACACGCTGATGCAGCGGGCGGGCCTCGCGGTGGCCCGCCTCG CACTGGCGCTGGCTCCGCATGCGCGGCGCATCTGGATCGCCTGCGGACCCGGCAACAACGGTGGCGACGGCTTCGAAGCC GCCCTGCACCTGCACCAGTGGGGCAAGACGGTGGTCGTCACCTGGACCGGCCTGCCGCCCGGAAAAACCAGCCTGCCGGC GGATGCCGATGCCTCCCGCCAGCGGGCCCTTGCGGCAGGCGTTCCGATGTCGGCTCAGCCCCCGGAGGATTTTGATTTCT GCATCGATGCCCTGCTGGGTATTGGCGCCCGGCTGGAGCCGGCTCGCGCGGGCACGGGCTCGATGCAGCAATGGCTGGAT GCGATGCAAGCCAGCGCCGCACCGCGGCTGGCCGTGGATGTACCGACCGGGCTGGATGCTGATACGGGCACCACAAACGC TGCAAAACCAATAGCACACGGCTCGCGTTTCACCACGGAAAATGATCTTTTTACCTTGAGTCTTTTGACACTGAAGCCAG GCCTGTTCACCGCCAGCGGGCGCGACCTGGCCGGCCAGGTCTGGTTTGATGATCTGGGGGTTGCAGCCAACCCCTCACTG GCGACAGTGCCTGACGCCTGGCTTCTGGGCGCGGATCGGGTGGCGCGATCCGCGCGAGCGGGTGCGGCCCACGCCAGCCA CAAGGGCAGCTTTGGTGATGTCGCCGTCGTGGGTGGTGAATCCGCCTCCGGCAGGCATATGACGGGCGCCGCCCTGCTGG CCGCCCGAGCGGCACTGCATGCGGGCGCCGGCCGAGTGTATGTGGCTCTGCTCACCGGCGTCGGTGAGGCCTCCCTGAAT GTCGATCCGGCGCAGCCAGAACTCATGTTCCGCAGCCCCGAAGCGCTGAACCTGAAGCAGCAGGTCGTGGTGTGCGGGTG CGGCGGCGGAGAAGCGGTCAAGACCGTCCTGCCCAAAATACTGTCAGCCGCCCCGCGGGTGGTGCTGGATGCCGACGCGC TCAATGCAATTGCCGCAGACCCACAACTGCAAACCCAGCTGAAGGCGCGCCATTACCGCGGGCTCGGCACGGTGCTGACA CCTCATCCGCTGGAGGCCGCGCGCTTGCTTGGCACAACAACCCCTGACGTGCAGGCCGACCGCCTTGCAACGGCCCGGCA ACTGGCCAGCCGGTTTCAGTGTGTCGTGGTACTCAAGGGCTCGGGCAGTGTCATCGCCGTACCGGGCCAGCCACCCTGCA TCAACGCCAGCGGCAACGCCTTGCTGGCCACACCGGGCACCGGCGATGTGCTGGCAGGCATGATCGGAGCCGCCATGGCA GGCGGACAAGGTCCTTTTGAGGCGGCCTGCAGCGCGGTGTTTGCCCATGGAAACCTGGCCGACGCATGGGCCACCCGCCA GCCGGGCGTGACGCTGACTGCGTCGACGCTGGCGGGCAACGCCCGCTGCTAG
Upstream 100 bases:
>100_bases CGCCTGGGCTGAACGCGCAGAACGGCCAGCGCCTGTTCTTGCCGGCTCCTTCTGTCTGAAAGTATCAGCCAGGAACGCCA TAAGACCGCACAATCATCCG
Downstream 100 bases:
>100_bases ACCAGCACCATCAAGCCGATTTGCAGTACCAGCAGCAGTACCAGTGCTGACAGGTCCAACCCACCGACGGTAGGAATCAC ACGCCGCAGCGGCGTTAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 523; Mature: 523
Protein sequence:
>523_residues MHHLMHHSMQKITNAVSQPLYSVAATRELELHAAAGLPPHTLMQRAGLAVARLALALAPHARRIWIACGPGNNGGDGFEA ALHLHQWGKTVVVTWTGLPPGKTSLPADADASRQRALAAGVPMSAQPPEDFDFCIDALLGIGARLEPARAGTGSMQQWLD AMQASAAPRLAVDVPTGLDADTGTTNAAKPIAHGSRFTTENDLFTLSLLTLKPGLFTASGRDLAGQVWFDDLGVAANPSL ATVPDAWLLGADRVARSARAGAAHASHKGSFGDVAVVGGESASGRHMTGAALLAARAALHAGAGRVYVALLTGVGEASLN VDPAQPELMFRSPEALNLKQQVVVCGCGGGEAVKTVLPKILSAAPRVVLDADALNAIAADPQLQTQLKARHYRGLGTVLT PHPLEAARLLGTTTPDVQADRLATARQLASRFQCVVVLKGSGSVIAVPGQPPCINASGNALLATPGTGDVLAGMIGAAMA GGQGPFEAACSAVFAHGNLADAWATRQPGVTLTASTLAGNARC
Sequences:
>Translated_523_residues MHHLMHHSMQKITNAVSQPLYSVAATRELELHAAAGLPPHTLMQRAGLAVARLALALAPHARRIWIACGPGNNGGDGFEA ALHLHQWGKTVVVTWTGLPPGKTSLPADADASRQRALAAGVPMSAQPPEDFDFCIDALLGIGARLEPARAGTGSMQQWLD AMQASAAPRLAVDVPTGLDADTGTTNAAKPIAHGSRFTTENDLFTLSLLTLKPGLFTASGRDLAGQVWFDDLGVAANPSL ATVPDAWLLGADRVARSARAGAAHASHKGSFGDVAVVGGESASGRHMTGAALLAARAALHAGAGRVYVALLTGVGEASLN VDPAQPELMFRSPEALNLKQQVVVCGCGGGEAVKTVLPKILSAAPRVVLDADALNAIAADPQLQTQLKARHYRGLGTVLT PHPLEAARLLGTTTPDVQADRLATARQLASRFQCVVVLKGSGSVIAVPGQPPCINASGNALLATPGTGDVLAGMIGAAMA GGQGPFEAACSAVFAHGNLADAWATRQPGVTLTASTLAGNARC >Mature_523_residues MHHLMHHSMQKITNAVSQPLYSVAATRELELHAAAGLPPHTLMQRAGLAVARLALALAPHARRIWIACGPGNNGGDGFEA ALHLHQWGKTVVVTWTGLPPGKTSLPADADASRQRALAAGVPMSAQPPEDFDFCIDALLGIGARLEPARAGTGSMQQWLD AMQASAAPRLAVDVPTGLDADTGTTNAAKPIAHGSRFTTENDLFTLSLLTLKPGLFTASGRDLAGQVWFDDLGVAANPSL ATVPDAWLLGADRVARSARAGAAHASHKGSFGDVAVVGGESASGRHMTGAALLAARAALHAGAGRVYVALLTGVGEASLN VDPAQPELMFRSPEALNLKQQVVVCGCGGGEAVKTVLPKILSAAPRVVLDADALNAIAADPQLQTQLKARHYRGLGTVLT PHPLEAARLLGTTTPDVQADRLATARQLASRFQCVVVLKGSGSVIAVPGQPPCINASGNALLATPGTGDVLAGMIGAAMA GGQGPFEAACSAVFAHGNLADAWATRQPGVTLTASTLAGNARC
Specific function: Unknown
COG id: COG0063
COG function: function code G; Predicted sugar kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YjeF N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1790609, Length=527, Percent_Identity=35.8633776091082, Blast_Score=232, Evalue=4e-62, Organism=Drosophila melanogaster, GI221329809, Length=150, Percent_Identity=32.6666666666667, Blast_Score=69, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017953 - InterPro: IPR000631 - InterPro: IPR004443 [H]
Pfam domain/function: PF01256 Carb_kinase; PF03853 YjeF_N [H]
EC number: NA
Molecular weight: Translated: 53502; Mature: 53502
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHHLMHHSMQKITNAVSQPLYSVAATRELELHAAAGLPPHTLMQRAGLAVARLALALAPH CCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC ARRIWIACGPGNNGGDGFEAALHLHQWGKTVVVTWTGLPPGKTSLPADADASRQRALAAG CEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCC VPMSAQPPEDFDFCIDALLGIGARLEPARAGTGSMQQWLDAMQASAAPRLAVDVPTGLDA CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC DTGTTNAAKPIAHGSRFTTENDLFTLSLLTLKPGLFTASGRDLAGQVWFDDLGVAANPSL CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCC ATVPDAWLLGADRVARSARAGAAHASHKGSFGDVAVVGGESASGRHMTGAALLAARAALH CCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH AGAGRVYVALLTGVGEASLNVDPAQPELMFRSPEALNLKQQVVVCGCGGGEAVKTVLPKI CCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHH LSAAPRVVLDADALNAIAADPQLQTQLKARHYRGLGTVLTPHPLEAARLLGTTTPDVQAD HHHCCCEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHH RLATARQLASRFQCVVVLKGSGSVIAVPGQPPCINASGNALLATPGTGDVLAGMIGAAMA HHHHHHHHHHCCEEEEEEECCCCEEEECCCCCEECCCCCEEEECCCCHHHHHHHHHHHHC GGQGPFEAACSAVFAHGNLADAWATRQPGVTLTASTLAGNARC CCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEEHCCCCCCCC >Mature Secondary Structure MHHLMHHSMQKITNAVSQPLYSVAATRELELHAAAGLPPHTLMQRAGLAVARLALALAPH CCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC ARRIWIACGPGNNGGDGFEAALHLHQWGKTVVVTWTGLPPGKTSLPADADASRQRALAAG CEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCC VPMSAQPPEDFDFCIDALLGIGARLEPARAGTGSMQQWLDAMQASAAPRLAVDVPTGLDA CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC DTGTTNAAKPIAHGSRFTTENDLFTLSLLTLKPGLFTASGRDLAGQVWFDDLGVAANPSL CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCEEEECCCCCCCCCCC ATVPDAWLLGADRVARSARAGAAHASHKGSFGDVAVVGGESASGRHMTGAALLAARAALH CCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH AGAGRVYVALLTGVGEASLNVDPAQPELMFRSPEALNLKQQVVVCGCGGGEAVKTVLPKI CCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHH LSAAPRVVLDADALNAIAADPQLQTQLKARHYRGLGTVLTPHPLEAARLLGTTTPDVQAD HHHCCCEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCHH RLATARQLASRFQCVVVLKGSGSVIAVPGQPPCINASGNALLATPGTGDVLAGMIGAAMA HHHHHHHHHHCCEEEEEEECCCCEEEECCCCCEECCCCCEEEECCCCHHHHHHHHHHHHC GGQGPFEAACSAVFAHGNLADAWATRQPGVTLTASTLAGNARC CCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEEHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 7511774 [H]